SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene76

Length: 411 nt

UniGene Fasta

>uagpf_v2_unigene76
TGACCTTGGCTGTCACTCATATCTGAGAGATGCAAGCTGCGCTTCTGGGGAATTTAGCTGTTTACCTTGGCAATTGGCACTGATAGAACGTTCGTGTGGAACTAGACTTTAAAAATGTCGTCTGGAGGGTTCTTGAATGCTCAGTTATCCAAGAAGACATCCATTTTTGGGATGAAACTCTGGGTCCTGATTGGTTTGGCTGTTGGAACATTCATTTTCTTAATTCTCTTTATGTTATCTCTTTGGCTTGGTTCTCGGAGAAAGTCGAGGAAAATACTAGAAAAGCTGCCCATTAACCAGATCCCAAAAGTTTCAAAGGAGATAAAAGAAGTAAAGGTTGATAGAAAAGGGATTAACAATCCTCCCCAAGGTGATGCAATTAGCTTCACTAATCAGGGCAATTCCAGCAAG

Ace file of the UniGene uagpf_v2_unigene76

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14179	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	putative receptor-like protein kinase 3 [Glycine max]	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	67%
Blast2go	probable receptor-like protein kinase at5g18500-like	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	78%
Blast2go	signal transducer activity	GO:0004871	Molecular Function	78%
Blast2go	ATP binding	GO:0005524	Molecular Function	78%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	78%

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Dilute	IPR002710	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	Myosin, N-terminal, SH3-like	IPR004009	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Uncharacterised protein family UPF0197	IPR007915	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Interleukin-4/interleukin-13, conserved site	IPR018096	-	-
Sma3	Dil domain	IPR018444	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PPY3

Fln msg: Distance to subject end: 193 aas, your sequence is shorter than subject: 99 - 295

Fln protein: MSSGGFLNAQLSKKTSIFGMKLWVLIGLAVGTFIFLILFMLSLWLGSRRKSRKILEKLPINQIPKVSKEIKEVKVDRKGINNPPQGDAISFTNQGNSSK

Protein Length: 100

Fln nts: TGACCTTGGCTGTCACTCATATCTGAGAGATGCAAGCTGCGCTTCTGGGGAATTTAGCTGTTTACCTTGGCAATTGGCACTGATAGAACGTTCGTGTGGAACTAGACTTTAAAA_-_ATGTCGTCTGGAGGGTTCTTGAATGCTCAGTTATCCAAGAAGACATCCATTTTTGGGATGAAACTCTGGGTCCTGATTGGTTTGGCTGTTGGAACATTCATTTTCTTAATTCTCTTTATGTTATCTCTTTGGCTTGGTTCTCGGAGAAAGTCGAGGAAAATACTAGAAAAGCTGCCCATTAACCAGATCCCAAAAGTTTCAAAGGAGATAAAAGAAGTAAAGGTTGATAGAAAAGGGATTAACAATCCTCCCCAAGGTGATGCAATTAGCTTCACTAATCAGGGCAATTCCAGCAAG

Fln Alignment:

Contig76___SSGGFLNAQLSKKTSIFGMKLWVLIGLAVGTFIFLILFMLSLWLGSRRKSRKILEKLP-INQIPKVSKEIKEVKVD
C0PPY3_____________SSTGFLNNELSKKTSILGLKLWVVIGICVGAFIVLILFCLSVWLTSKRKSKRIPKKYPSTSKIPMVSKEIQEVKVD

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
119	33	66			1.0
272	40		60		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain