SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene37

Length: 456 nt

UniGene Fasta

>uagpf_v2_unigene37
ACCAAAAGCAGGCCAAATTGTAACGCATGTCCAATGAGGTTTCAGTGCAAACACTTTGCAAGTGCATGTGCAAGCGCAAAGCCTGCCCTTCCAGCTCCACATGATGAATTTTCATCACAACAAATTTCTTCATTCAATCTGTCTTCCCAACAAAACTTGGATCCACTGGCTCTCCCACCAAATTATTCATTCAGTATGCCATATCAACAAAATTTGGATCTCCTAAGCAACATGCTAGCTCTTGAACCCATTCAACAGCAACATATGACACCAGATTCCAGCATTCTGCAGGAGTTTTTACCATCAAATTTTCAGATCCAAAATTATGAACCAATAATTGAAGAGCCCGCAACACCAGAACATGAGTATGTAGACAGCTTTGAAACTCCAGCGCTTGAATCACCTGCTACAGAGGATGATGAAATTCCCACCTTCGCAGTGAGTGACAGCCAAGGT

Ace file of the UniGene uagpf_v2_unigene37

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25094	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DME; DME (DEMETER); DNA N-glycosylase/ DNA-(apurinic or apyrimidinic site) lyase	-	-	8.00141e-43	45%
FL-Next	Isoform 2 of Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME	-	-	0.0	38%
Blast2go	transcriptional activator demeter-like	-	-	0.0	56%

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	HhH-GPD domain	IPR003265	-	-
Sma3	Endonuclease III-like, iron-sulphur cluster loop motif	IPR003651	-	-
Sma3	Endonuclease III, iron-sulphur binding site	IPR004035	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8LK56-2

Fln msg: Distance to subject end: 235 aas, your sequence is shorter than subject: 152 - 674

Fln protein: TKSRPNCNACPMRFQCKHFASACASAKPALPAPHDEFSSQQISSFNLSSQQNLDPLALPPNYSFSMPYQQNLDLLSNMLALEPIQQQHMTPDSSILQEFLPSNFQIQNYEPIIEEPATPEHEYVDSFETPALESPATEDDEIPTFAVSDSQG

Protein Length: 153

Fln nts: ACCAAAAGCAGGCCAAATTGTAACGCATGTCCAATGAGGTTTCAGTGCAAACACTTTGCAAGTGCATGTGCAAGCGCAAAGCCTGCCCTTCCAGCTCCACATGATGAATTTTCATCACAACAAATTTCTTCATTCAATCTGTCTTCCCAACAAAACTTGGATCCACTGGCTCTCCCACCAAATTATTCATTCAGTATGCCATATCAACAAAATTTGGATCTCCTAAGCAACATGCTAGCTCTTGAACCCATTCAACAGCAACATATGACACCAGATTCCAGCATTCTGCAGGAGTTTTTACCATCAAATTTTCAGATCCAAAATTATGAACCAATAATTGAAGAGCCCGCAACACCAGAACATGAGTATGTAGACAGCTTTGAAACTCCAGCGCTTGAATCACCTGCTACAGAGGATGATGAAATTCCCACCTTCGCAGTGAGTGACAGCCAAGGT

Fln Alignment:

Contig37___TKSRPNCNACPMRFQCKHFASACASAKPALPAPHDEXXXXXXXXXXXXXXXXXDPLALPPNYSFSMPYQQNLDLLSNMLALEPIQQQHMTPDSSILQEFLPSNFQIQNYEPIIEEPATPEHEYVDSFETPALESPATED-DEIPTFAVSDSQ
Q8LK56-2___________TKSRPNCNACPMRGECRHFASAYASARLALPAPEER---SLTSATIPVPPESYPPVAIP------------------MIELP-------LPLEKSLASGAPSN--RENCEPIIEEPASPGQECTEITESDIEDAYYNEDPDEIPTIKLNIEQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain