SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene28

Length: 604 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene uagpf_v2_unigene28 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene12738	33/33

Source	Descriptions	Term	Type	Identity
AutoFact	Cystathionine beta-synthase (CBS) protein [Arabidopsis thaliana] gb\|AEE34977.1\| Cystathionine beta-synthase (CBS) protein [Arabidopsis thaliana]	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	snf1-related protein kinase regulatory subunit gamma-1-like	-	-	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	0.0	78%
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	78%

Source	InterPros	Term	Type	Identity
Sma3	TPP-binding enzyme, conserved site	IPR000399	-	-
Sma3	Cystathionine beta-synthase, core	IPR000644	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-

Full-Lengther Next Prediction

SNPs (tot: 67)

Position	A %	C %	G %	T %	Probability
254	50			50	1.0
349		45	54		1.0
452		90		9	0.999872
453	90		9		0.999872
455	85		14		1.0
456		85	4		0.999726
458	85	4	9		0.999726
460		5		85	0.999793
463		90	10		0.999898
464		10	5	85	0.999793
468	89		10		0.999919
470	89			10	0.999919
471	89	10			0.999919
472	10			89	0.999919
474			13	86	0.999973
476		13		86	0.999973
477			13	86	0.999973
485	84			15	0.999986
487	16	83			0.999991
488		83	16		0.999991
489	83			16	0.999991
490	83		16		0.999991
493			18	81	0.999994
494	54	18		27	1.0
495		18	27		1.0
497	18		27	54	1.0
498			27	72	1.0
499	9		45	45	1.0
500	27			72	1.0
503	54	18	27		1.0
505	63	36			1.0
507	81		18		0.999994
508	44			55	1.0
513	33		11	55	1.0
514	11	33		55	1.0
515			33	66	1.0
518	66		33		1.0
532	80			20	0.995493
533	80		20		0.995493
534	20	80			0.995493
535	80		20		0.995493
539		20		80	0.995493
543	80	20			0.995493
546	20			80	0.995493
547		80	20		0.995493
551	20			80	0.995493
552		20		80	0.995493
553	80		20		0.995493
555		20		80	0.995493
563		66		33	0.997452
564		66	33		0.997452
565	33	66			0.997452
566		66	33		0.997452
567		66		33	0.997452
568	66		33		0.997452
572	66		33		0.997452
574		33		66	0.997452
576	66			33	0.997452
577	33		33	33	0.997753
578	33	33	33		0.997753
579			66	33	0.997452
581		33	66		0.997452
582	66	33			0.997452
584	33	33	33		0.997753
585	66		33		0.997452
586		66		33	0.997452
587		33	33	33	0.997753

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain