SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene9

Length: 336 nt

UniGene Fasta

>uagpf_v2_unigene9
CGTGACCTTGGCTGTCACTCAGGTAGAGCCCAGAAAGGGTGCGGGGTATCGAAATCTTGACTAAAGTTATACCAGTTTAAGTTTTACAGAGCACAACAGACCGAAGAGCAGAACTGCAAGGATGGCTGACCTGGGCTTTGAAGAAGCGGACGAGGAGGTCGAAAACTTCCTGGAAACCCAAAGCTCCGACAACAACTACATGGTCGGCTTTGTCCTGGCCAATGTCGTGGGATTGCAGTACTACACGGGCACCATCAATGGCCGTGAAATGATTCGACTAGTTCGCGAGCCTGAAAATCGGCACGACCCCAACGCCATCAAAGTCCTCAACATGAG

Ace file of the UniGene uagpf_v2_unigene9

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9125	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: similar to SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein n=1 Tax=Vitis vinifera RepID=UPI0001983C0B	-	-	46%
FL-Next	sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	60%
Blast2go	helicase-like transcription factor-like protein	-	-	59%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on acid anhydrides, In phosphorous-containing anhydrides.	EC:3.6.1.-	-	0.0	59%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	59%
Blast2go	Lipopolysaccharide biosynthesis	00540	59%
Blast2go	Folate biosynthesis	00790	59%
Blast2go	Metabolic pathways	01100	59%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	59%
Blast2go	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	GO:0016818	Molecular Function	0.0	59%

Source	InterPros	Term	Type	Identity
Sma3	SNF2-related	IPR000330	-	-
Sma3	von Willebrand factor, type C	IPR001007	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	IPR002464	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	HIP116, Rad5p N-terminal	IPR014905	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: Q9FF61

Fln msg: Distance to subject end: 778 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 71 - 881

Fln protein: MADLGFEEADEEVENFLETQSSDNNYMVGFVLANVVGLQYYTGTINGREMIRLVREPENRHDPNAIKVLNM

Protein Length: 72

Fln nts: CGTGACCTTGGCTGTCACTCAGGTAGAGCCCAGAAAGGGTGCGGGGTATCGAAATCTTGACTAAAGTTATACCAGTTTAAGTTTTACAGAGCACAACAGACCGAAGAGCAGAACTGCAAGG_-_ATGGCTGACCTGGGCTTTGAAGAAGCGGACGAGGAGGTCGAAAACTTCCTGGAAACCCAAAGCTCCGACAACAACTACATGGTCGGCTTTGTCCTGGCCAATGTCGTGGGATTGCAGTACTACACGGGCACCATCAATGGCCGTGAAATGATTCGACTAGTTCGCGAGCCTGAAAATCGGCACGACCCCAACGCCATCAAAGTCCTCAACATGAG

Fln Alignment:

Contig9___ETQSSD---NNYMVGFVLANVVGLQYYTGTINGREMIRLVREPENRHDPNAIKVLN
Q9FF61____________QQQSQDCVSESYLIGFVIANIVGLKYYSGRINGREMVGLVREPLNVYDNNAIRVLN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain