SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene56193

Length: 393 nt

UniGene Fasta

>uagpf_v2_unigene56193
CGTCGTGACCTTGGCTGTCACTAACTCGTGGTTTTGGTTGTGATTACTTTTTACGACAGTGTCGGCTCCGAGGAAGGCTTGATTCAAATGGTTGCGTCGCTGCTTATTTGGAAGAAAGATTGAATATGGGAGTCAATTTTGTTCTTTCTGCAGAAATCGATCATTGGAAGAAGGATTACAAGTTTGGATTTGGGATGACTGTTGGAGAGCTGTAGTCTTTGTCTGCATGCCAATTTTAATTATTGGCTTATGACTGAGAGCTTTCTCCAAAATTCTTATTGCTAGGTTATTTGCATTGGCAGGTCATTGAATAACAACTATCTTTTGGTGTTTATGAACATCAGCTATGCCCAATGAAATGCATGAGCTGTATCTGCTCTTTGTTTGTCTGCA

Ace file of the UniGene uagpf_v2_unigene56193

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5199	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Mitochondrial import receptor subunit TOM40 n=2 Tax=Zea mays RepID=B6TEP3_MAIZE	-	-	79%
FL-Next	sp=Mitochondrial import receptor subunit TOM40 homolog 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	67%
Blast2go	mitochondrial import receptor subunit tom40	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	88%
Blast2go	regulation of anion transport	GO:0044070	Biological Process	88%
Blast2go	receptor activity	GO:0004872	Molecular Function	88%
Blast2go	voltage-gated anion channel activity	GO:0008308	Molecular Function	88%
Blast2go	mitochondrial outer membrane	GO:0005741	Cellular Component	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	Porin, eukaryotic type	IPR001925	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9LHE5

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 71 - 309

Fln protein: S*PWLSLTRGFGCDYFLRQCRLRGRLDSNGCVAAYLEERLNMGVNFVLSAEIDHWKKDYKFGFGMTVGEL*

Protein Length: 72

Fln nts: CGTCGTGACCTTGGCTGTCACTAACTCGTGGTTTTGGTTGTGATTACTTTTTACGACAGTGTCGGCTCCGAGGAAGGCTTGATTCAAATGGTTGCGTCGCTGCTTATTTGGAAGAAAGATTGAATATGGGAGTCAATTTTGTTCTTTCTGCAGAAATCGATCATTGGAAGAAGGATTACAAGTTTGGATTTGGGATGACTGTTGGAGAGCTGTAG___TCTTTGTCTGCATGCCAATTTTAATTATTGGCTTATGACTGAGAGCTTTCTCCAAAATTCTTATTGCTAGGTTATTTGCATTGGCAGGTCATTGAATAACAACTATCTTTTGGTGTTTATGAACATCAGCTATGCCCAATGAAATGCATGAGCTGTATCTGCTCTTTGTTTGTCTGCA

Fln Alignment:

uagpf_mira_rep_c94420___LTRGFGCDYFLRQCRLRGRLDSNGCVAAYLEERLNMGVNFVLSAEIDHWKKDYKFGFGMTVG
Q9LHE5________________VTASVGYDYMLRQARVRGKIDSNGVASALLEERLSMGLNFLLSAELDHKKKDYKFGFGLTVG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain