SustainPineDB

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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene56099

Length: 344 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene56099
GATCTACATGATGTGCAACCGTCACAAAAGGTACGTATTGCATCTTTATCTTTAGAACCGAATCAGTTTGTATGGTATAGAGGGCTTTGTTCTCGTAAACCACTTGTCACCTAGTCAATTTTCACTGAGGGAATGACAACACATTATGAGGATACAAAGAGAAACACTTTCTTTAGCCAATTGATAAATCTCAAACAGAAGGGTTCAATGGAAAAGCACATTGAGGACTTCCAAAAATTGAATATAAGGGTAAATGATATTCCAGAAGAGCATAAGATTGATGTCTTCATAGGGACTTTAAAGGATACCATCCAACATAATGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene uagpf_v2_unigene56099 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene83606	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polyprotein n=2 Tax=Primula vulgaris RepID=A5X2S4_9ERIC	-	-	8.0e-09	32%
FL-Next	tr=Polyprotein; Primula vulgaris.	-	-	0.0	32%
Blast2go	uncharacterized protein loc100812827	-	-	3.93831e-10	51%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5X2S4

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 1201 aas, your sequence is shorter than subject: 109 - 1359

Fln protein: DLHDVQPSQKVRIASLSLEPNQFVWYRGLCSRKPLVT*SIFTEGMTTHYEDTKRNTFFSQLINLKQKGSMEKHIEDFQKLNIRVNDIPEEHKIDVFIGTLKDTIQHNE*

Protein Length: 110

Fln nts: GATCTACATGATGTGCAACCGTCACAAAAGGTACGTATTGCATCTTTATCTTTAGAACCGAATCAGTTTGTATGGTATAGAGGGCTTTGTTCTCGTAAACCACTTGTCACCTAGTCAATTTTCACTGAGGGAATGACAACACATTATGAGGATACAAAGAGAAACACTTTCTTTAGCCAATTGATAAATCTCAAACAGAAGGGTTCAATGGAAAAGCACATTGAGGACTTCCAAAAATTGAATATAAGGGTAAATGATATTCCAGAAGAGCATAAGATTGATGTCTTCATAGGGACTTTAAAGGATACCATCCAACATAATGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

uagpf_mira_rep_c94068___LHDVQPSQKVRIASLSLEPNQFVWYRGLCSRKPLVT*SIFTEGMTTHYEDTKRNTFFSQLINLKQKGSMEKHIEDFQKLNIRVNDIPEEHKIDVFIGTLKDTI
A5X2S4________________LYQTPETQRIKIANLHFEGQPLVWYQNLEKSDLISSWDNLCDQMTKRFGENLNENPLDQLIKLKQRNSVKEYKSDFEIISNRVKDLSEEHKLTYFICGLKEEI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain