SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene55898

Length: 341 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene55898
CGTCGTGACCTTGGCTGTCACTCAATTTTTATAAGCAATGTTGTGTTAGGATTTCGGAGAATCCAATATTTTATGATAAGCCAAAGCACATTGATATTAAATATCACTACATCTAAGAAATGGTGCAGAAGAGGGCATTTAAGCTCCAATATGTAGGTTTTAACCCTGTACAGAAATAACATGCATACGAATTCTTAAACAAAGAAAATAAACAATGAGAGAGCATAACACATAAAACACATATGCACAGAGATTTCCCCTAGATCCCAAAACCGGGACTACCAGCTTGATTTTTCATTATATTCCTTTCAATGTTATGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene uagpf_v2_unigene55898 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene24416	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gag-Pol polyprotein n=4 Tax=Medicago truncatula RepID=B8YLY3_MEDTR	-	-	9.0e-21	46%
FL-Next	tr=Putative uncharacterized protein Sb01g023130; Sorghum bicolor (Sorghum) (Sorghum vulgare).	-	-	0.0	43%
Blast2go	gag-pol polyprotein	-	-	3.50465e-23	64%

Source	InterPros	Term	Type	e value	Identity
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: C5WN56

Fln msg: Unexpected stop codon in the beginning of your sequence, query STOP codon too far from subject stop. Distance to subject end: 81 aas, putative chimeric sequence, your sequence is shorter than subject: 38 - 885

Fln protein: S*PWLSLNFYKQCCVRISENPIFYDKPKHIDIKYHYI*

Protein Length: 39

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTTATAAGCAATGTTGTGTTAGGATTTCGGAGAATCCAATATTTTATGATAAGCCAAAGCACATTGATATTAAATATCACTACATCTAA___GAAATGGTGCAGAAGAGGGCATTTAAGCTCCAATATGTAGGTTTTAACCCTGTACAGAAATAACATGCATACGAATTCTTAAACAAAGAAAATAAACAATGAGAGAGCATAACACATAAAACACATATGCACAGAGATTTCCCCTAGATCCCAAAACCGGGACTACCAGCTTGATTTTTCATTATATTCCTTTCAATGTTATGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

uagpf_mira_rep_c93375___LSLNFYKQCCVRISENPIFYDKPKHIDIKYHYI*EMVQKRAFKLQYVG
C5WN56________________ISLKIDNQSAIALSRNPVFHDRSKHIDVRYHYIRECVEENRVQLQSIG

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain