SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene55730

Length: 373 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene55730
AAGTGGGGATGTGTACTTGGCTTCTTCAACTACACTTGTAGATCATGACCCGGNATGGTTGATTGACTCAGGTGCATCCTTTCACTTCACTCCCCATAGAGAGTGGTTCTGCGAGTATGAGAAATACGATGGTGGTGATGTCTTCTTAGGAGATGATAGGAAGGCTAGAATCATTGGTCACGGAAAAGTAAAGTTGAAGTTGCAAGGTGGAAGGGTTAGAACACTTCCGGGTGTTCTACATATTCCTGCATTGGCCAGAAATATGATTTCTGTAAGCAAGTTGAGTGACAGCCAAGGTCACGACGGTGTTCGAGAAAGATACCTGCAAGATGGTTCGAGGAGCATTGATTGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene uagpf_v2_unigene55730 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7355	1/4
SustainPine v2.0	sp_v2.0_unigene24586	2/4

Source	Descriptions	Term	Type	Identity
AutoFact	Gag-Pol polyprotein n=4 Tax=Medicago truncatula RepID=B8YLY3_MEDTR	-	-	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	33%
Blast2go	gag-pol polyprotein	-	-	56%

Source	InterPros	Term	Type	Identity
Sma3	Lipase, GDSL	IPR001087	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWA6

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 19 aas, your sequence is shorter than subject: 117 - 173

Fln protein: SGDVYLASSTTLVDHDPVWLIDSGASFHFTPHREWFCEYEKYDGGDVFLGDDRKARIIGHGKVKLKLQGGRVRTLPGVLHIPALARNMISVSKLSDSQGHDGVRERYLQDGSRSID*

Protein Length: 118

Fln nts: AAGTGGGGATGTGTACTTGGCTTCTTCAACTACACTTGTAGATCATGACCCGGtATGGTTGATTGACTCAGGTGCATCCTTTCACTTCACTCCCCATAGAGAGTGGTTCTGCGAGTATGAGAAATACGATGGTGGTGATGTCTTCTTAGGAGATGATAGGAAGGCTAGAATCATTGGTCACGGAAAAGTAAAGTTGAAGTTGCAAGGTGGAAGGGTTAGAACACTTCCGGGTGTTCTACATATTCCTGCATTGGCCAGAAATATGATTTCTGTAAGCAAGTTGAGTGACAGCCAAGGTCACGACGGTGTTCGAGAAAGATACCTGCAAGATGGTTCGAGGAGCATTGATTGA___GTGACAGCCAAGGTCACGACG

Fln Alignment:

uagpf_mira_rep_c92703___SSTTLVDHDPVWLIDSGASFHFTPHREWFCEY-EKYDGGDVFLGDDRKARIIGHGKVKLKLQGGRVRTLPGVLHIPALARNMISVSKLSD
A9NWA6________________STLTGTIEDDMWIIDNGASRHMMGDQARLSDLNERKTSYKVELGDKSTYPVEGFGQASIKLESGNHVHLSNVLYVPGLEKNLVSISCLED

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
73			66	33	0.997476
75			66	33	0.997476
137		33		66	0.997452
146		66		33	0.997452
151		50	50		1.0
163		33		66	0.997452
174	66		33		0.997452
194	33		66		0.997452
195		33		66	0.997452
202		50		50	1.0
203		33	66		0.997452
211		66	33		0.997452
224		25		75	0.99649
227		25		75	0.99649
233		25	75		0.996486
239		75	25		0.99649
241		75		25	0.99649
243	75		25		0.99649
249	33		66		0.997452
282	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain