SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene51730

Length: 309 nt

UniGene Fasta

>uagpf_v2_unigene51730
CGTCGTGACCTTGGCTGTCACTCAAATTTGCAGAAGACTTCGTGACCTTGGCTGTCATTCCATTGGGTAAAATCAGGAGACCATTGTCGAGGACTAGGGCGAATGACCCTCAGAAGGTCAAGGATTTAATGGACAGTATTGCAGAAATAGGTCTCCAGGAGCCTATAGATGTGCTTGAGGTTGATGGTACATACTACGGCATCATATGCGTTGAAGAGCATTGATGAAACATGAAGGAGTAATGATGTTTCACATAATGCTTTCAAGATCTGTTAGGATTACATAATTTCTCTTTCTACTACAATAGTC

Ace file of the UniGene uagpf_v2_unigene51730

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene77370	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Sulfiredoxin-1, putative n=1 Tax=Ricinus communis RepID=B9SCC3_RICCO	-	-	1.0e-19	61%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	83%
Blast2go	beach domain-containing protein lvse	-	-	1.12999e-24	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to oxidative stress	GO:0006979	Biological Process	1.12999e-24	80%
Blast2go	oxidoreductase activity, acting on a sulfur group of donors	GO:0016667	Molecular Function	1.12999e-24	80%
Blast2go	chloroplast	GO:0009507	Cellular Component	1.12999e-24	80%

Source	InterPros	Term	Type	Identity
Sma3	ParB-like nuclease	IPR003115	-	-
Sma3		IPR013089	-	-
Sma3	Development/cell death domain	IPR013989	-	-
Sma3	Sulfiredoxin	IPR016692	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: B9I4P9

Fln msg: Unexpected stop codon in the beginning of your sequence, query STOP codon is far from subject stop. Distance to subject end: 28 aas, your sequence is shorter than subject: 74 - 125

Fln protein: S*PWLSLKFAEDFVTLAVIPLGKIRRPLSRTRANDPQKVKDLMDSIAEIGLQEPIDVLEVDGTYYGIICVEEH*

Protein Length: 75

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATTTGCAGAAGACTTCGTGACCTTGGCTGTCATTCCATTGGGTAAAATCAGGAGACCATTGTCGAGGACTAGGGCGAATGACCCTCAGAAGGTCAAGGATTTAATGGACAGTATTGCAGAAATAGGTCTCCAGGAGCCTATAGATGTGCTTGAGGTTGATGGTACATACTACGGCATCATATGCGTTGAAGAGCATTGA___TGAAACATGAAGGAGTAATGATGTTTCACATAATGCTTTCAAGATCTGTTAGGATTACATAATTTCTCTTTCTACTACAATAGTC

Fln Alignment:

uagpf_mira_rep_c66186___IPLGKIRRPLSRTRANDPQKVKDLMDSIAEIGLQEPIDVLEVDGTYYG
B9I4P9________________LPLDKIRRPLMRTRANDPNKVKELMDSIKEIGLQVPIDVLEVDGVYYG

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain