SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene51587

Length: 362 nt

UniGene Fasta

>uagpf_v2_unigene51587
CGTCGTGACCTTGGCTGTCACTCATTTGTGCATCCCGGATACACCAAGGGTGTGGGTTTGGCTGCTGAAATCATCGGCACCTTTGTGCTGGTTTACACTGTTTTCTCTGCAACCGACCCCAAGCGCAGTGCTCGAGACTCCCATGTTCCTGTCTTGGCTCCATTGCCTATTGGTTTTGCTGTTTTCATGGTACATTTGGCCACCATTCCCATCACTGGGACAGGCATCAACCCTGCAAGGAGCTTCGGAGCAGCAGTGATTTATGGCCACAAACAATCTTGGAATGACCAATGGATTTTCTGGGTAGGTCCTTTTTGTGGAGCTGCATTAGCTGCTGCCTACCACCAATATATTCTGAGGGC

Ace file of the UniGene uagpf_v2_unigene51587

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7196	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Acyl-[acyl-carrier-protein] desaturase n=1 Tax=Picea sitchensis RepID=A9NVD4_PICSI	-	-	93%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	stearoyl-acyl-carrier protein desaturase	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Acyl-[acyl-carrier-protein] desaturase.	EC:1.14.19.2	-	0.0	87%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Fatty acid biosynthesis	00061		0.0	87%
Blast2go	Biosynthesis of unsaturated fatty acids	01040		0.0	87%

Source	GOs	Term	Type	Identity
Blast2go	fatty acid biosynthetic process	GO:0006633	Biological Process	87%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	87%
Blast2go	transition metal ion binding	GO:0046914	Molecular Function	87%
Blast2go	acyl-[acyl-carrier-protein] desaturase activity	GO:0045300	Molecular Function	87%
Blast2go	chloroplast	GO:0009507	Cellular Component	87%
Blast2go	mitochondrion	GO:0005739	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	Fatty acid desaturase, type 2	IPR005067	-	-
Sma3	Ribonucleotide reductase-related	IPR012348	-	-
Sma3	Stearoyl-ACP desaturase, conserved site	IPR005803	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PR90

Fln msg: STOP codon was not found. Distance to subject end: 15 aas, your sequence is shorter than subject: 120 - 282

Fln protein: RRDLGCHSFVHPGYTKGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYGHKQSWNDQWIFWVGPFCGAALAAAYHQYILR

Protein Length: 121

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTGTGCATCCCGGATACACCAAGGGTGTGGGTTTGGCTGCTGAAATCATCGGCACCTTTGTGCTGGTTTACACTGTTTTCTCTGCAACCGACCCCAAGCGCAGTGCTCGAGACTCCCATGTTCCTGTCTTGGCTCCATTGCCTATTGGTTTTGCTGTTTTCATGGTACATTTGGCCACCATTCCCATCACTGGGACAGGCATCAACCCTGCAAGGAGCTTCGGAGCAGCAGTGATTTATGGCCACAAACAATCTTGGAATGACCAATGGATTTTCTGGGTAGGTCCTTTTTGTGGAGCTGCATTAGCTGCTGCCTACCACCAATATATTCTGAGGGC

Fln Alignment:

uagpf_mira_rep_c65259___GCHSFVHPGYTKGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYGHKQSWNDQWIFWVGPFCGAALAAAYHQYILR
C0PR90________________GGANFVHPGYTKGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYGHKQSWDDHWIFWVGPFIGAALAAAYHQYILR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain