SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene5537

Length: 763 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene5537

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14384	15/16

Source	Descriptions	Term	Type	Identity
AutoFact	Putative auxin response factor 5/7 (Fragment) n=1 Tax=Gnetum gnemon RepID=E1UHX8_GNEGN	-	-	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	71%
Blast2go	auxin response factor 5-like	-	-	58%

Source	GOs	Term	Type	Identity
Blast2go	cellular process	GO:0009987	Biological Process	58%
Blast2go	protein dimerization activity	GO:0046983	Molecular Function	58%
Blast2go	nucleus	GO:0005634	Cellular Component	58%

Source	InterPros	Term	Type	Identity
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	AUX/IAA protein	IPR003311	-	-
Sma3	B3 DNA binding domain	IPR003340	-	-
Sma3	Auxin response factor	IPR010525	-	-
Sma3	Aux/IAA-ARF-dimerisation	IPR011525	-	-

Full-Lengther Next Prediction

SNPs (tot: 48)

Position	A %	C %	G %	T %	Probability
199	83		16		0.994512
200		83		16	0.994512
205		16	83		0.994512
206	16	83			0.994512
263		14		85	0.993533
264			14	85	0.993533
267	85		14		0.993533
268		85		14	0.993533
269	85		14		0.993533
270	14		85		0.993533
272	75	12	12		0.975346
274		12		87	0.992554
275			25	75	1.0
276		75	12	12	0.975346
277		87	12		0.992554
279		12		87	0.992554
280		87	12		0.992554
282		87		12	0.992554
283	87		12		0.992554
284	75	12	12		0.975346
285	75	12		12	0.975346
286		87		12	0.992554
288	12			87	0.992554
289		12	87		0.992554
290	12	87			0.992554
291		12	87		0.992554
293		12	87		0.992554
294	12		87		0.992554
366		11		88	0.923564
367			11	88	0.923564
369		11		88	0.923564
371	88			11	0.923564
372	88		11		0.923564
374		11		88	0.923564
375		11		88	0.923564
379			11	88	0.923564
382	88		11		0.923564
388	11		88		0.923564
538	85		14		0.993533
539	85			14	0.993533
541			14	85	0.993533
544	14	85			0.993533
545		14		85	0.993533
546		14	85		0.993533
549			14	85	0.993533
552	85		14		0.993533
554	14			85	0.993533
557	16	16	66		0.988813

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain