SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene5306

Length: 965 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene5306

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2981	14/21
SustainPine v2.0	sp_v2.0_unigene9603	7/21

Source	Descriptions	Term	Type	Identity
AutoFact	Cytochrome b n=4 Tax=Magnoliophyta RepID=D7RMW5_9CARY	-	-	88%
FL-Next	sp=Cytochrome b6; Pinus nelsonii. Plastid; Chloroplast.	-	-	34%
Blast2go	apocytochrome b	-	-	95%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquinol--cytochrome-c reductase.	EC:1.10.2.2	-	0.0	95%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Oxidative phosphorylation	00190		0.0	95%
Blast2go	Metabolic pathways	01100		0.0	95%

Source	GOs	Term	Type	Identity
Blast2go	multidimensional cell growth	GO:0009825	Biological Process	95%
Blast2go	transport	GO:0006810	Biological Process	95%
Blast2go	response to salt stress	GO:0009651	Biological Process	95%
Blast2go	cellulose microfibril organization	GO:0010215	Biological Process	95%
Blast2go	respiratory electron transport chain	GO:0022904	Biological Process	95%
Blast2go	aerobic respiration	GO:0009060	Biological Process	95%
Blast2go	ubiquinol-cytochrome-c reductase activity	GO:0008121	Molecular Function	95%
Blast2go	metal ion binding	GO:0046872	Molecular Function	95%
Blast2go	electron carrier activity	GO:0009055	Molecular Function	95%
Blast2go	external side of plasma membrane	GO:0009897	Cellular Component	95%
Blast2go	integral to membrane	GO:0016021	Cellular Component	95%
Blast2go	mitochondrial respiratory chain complex III	GO:0005750	Cellular Component	95%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	95%
Blast2go	longitudinal side of cell surface	GO:0009930	Cellular Component	95%
Blast2go	anchored to plasma membrane	GO:0046658	Cellular Component	95%

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome b/b6, N-terminal	IPR005797	-	-
Sma3	Cytochrome b/b6, C-terminal	IPR005798	-	-
Sma3	Cytochrome b/b6	IPR016175	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: F0UX81

Fln msg: STOP codon was not found. Distance to subject end: 33 aas, your sequence is longer than subject: 249 - 215

Fln protein: MTMGKQRFSILKQPILSTLNQHLIDYPTPSNLSYWWGFGSLAGICLAIQIVTGVFLAMHYTPHVDLAFNSVEHIMRDVEGGWLLRYMHANGASMFFIVVYLHIFRGLYYASYGSPREFVWCLGVVIFLLMIVTAFIGYVLPWGQMSFWGATVITSLASAIPVVGYTIVTWLWGGFSVDNATLNRFFSLHYLLPFILVGASLLHMAALHQYGSNNPLGVHSKMDRIAFYPYFYVKDLVGWVAFAIFFSIW

Protein Length: 250

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTAGTTGCCTTCCCGGGGCTAAAAATAGGCAGGATAACCTACACAAAGAACCTACACAAACGAACAAAGTAACTCGCACGTACCCTCCCTTCGCGTAGCTCAGGTGACTCGCTGTTTGCTCGTTTCTTATTTCTTTGTTGAGTCGAGGGGGATAACGTCGATCGAATTGGGGAACAAGAGTGATATAGGAGAC_-_ATGACTATGGGAAAACAACGATTTTCTATTCTTAAACAACCCATATTATCTACACTTAACCAGCATTTGATAGATTATCCGACCCCGAGCAATCTAAGTTATTGGTGGGGGTTTGGTTCGTTAGCTGGTATTTGTCTAGCCATTCAGATAGTGACCGGCGTTTTTCTAGCTATGCATTACACACCTCATGTGGATCTAGCTTTCAACAGCGTAGAACACATCATGAGAGATGTTGAAGGGGGCTGGTTGCTTCGTTATATGCATGCTAATGGGGCAAGTATGTTTTTCATTGTGGTTTACCTTCATATTTTTCGTGGTTTGTATTATGCGAGTTATGGCAGTCCTAGGGAATTCGTTTGGTGTCTCGGAGTTGTCATCTTCCTATTAATGATTGTGACAGCTTTTATAGGATACGTACTACCTTGGGGTCAGATGAGCTTTTGGGGAGCTACGGTAATTACAAGCTTAGCTAGCGCCATACCTGTAGTGGGATATACTATAGTGACTTGGCTTTGGGGTGGTTTCTCCGTGGACAATGCCACCTTAAATCGTTTCTTTAGTCTTCATTATTTACTCCCTTTTATTCTAGTAGGCGCCAGTCTTCTTCATATGGCCGCATTGCATCAATATGGATCAAATAATCCATTGGGTGTACATTCAAAGATGGATAGAATTGCTTTTTATCCATATTTTTACGTGAAGGATCTAGTAGGTTGGGTAGCTTTCGCTATCTTCTTTTCCATTTGGA

Fln Alignment:

Contig5306___PSNLSYWWGFGSLAGICLAIQIVTGVFLAMHYTPHVDLAFNSVEHIMRDVEGGWLLRYMHANGASMFFIVVYLHIFRGLYYASYGSPREFVWCLGVVIFLLMIVTAFIGYVLPWGQMSFWGATVITSLASAIPVVGYTIVTWLWGGFSVDNATLNRFFSLH-YLLPFILVGASLLHMAALHQYGSNNPL
F0UX81_______________PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYLMTEVNFGWLIRSIHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVILAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHTFILPLLTAVFMPMHFLMIRKQGISGPL

SNPs (tot: 57)

Position	A %	C %	G %	T %	Probability
110		66		33	0.997452
162		33		66	0.997452
165		33		66	0.997452
323		33	66		0.997452
328			66	33	0.997452
330	33		66		0.997452
331		33	66		0.997452
332		33		66	0.997452
337		33		66	0.997452
342		33		66	0.997452
348		33	66		0.997452
349	33			66	0.997452
353		25		75	0.996473
357			25	75	0.996473
358	75			25	0.996473
360	25	75			0.996473
362	75	25			0.996473
366	75		25		0.996473
368	75	25			0.996473
373		25	75		0.996473
377			75	25	0.996473
378		25	75		0.996473
379	25	75			0.996473
451		25		75	0.996473
481	25		75		0.996473
488	75			25	0.996473
489	75	25			0.996473
490			25	75	0.996473
491		33	66		0.997452
509	66		33		0.997452
511		33		66	0.997452
516		33	66		0.997452
517		33		66	0.997452
520	66		33		0.997452
521		66	33		0.997452
551		25		75	0.996473
552	75		25		0.996473
555		75		25	0.996473
558		25	75		0.996473
559		25		75	0.996473
566	75			25	0.996473
575		25	75		0.996473
576	25		75		0.996473
606			25	75	1.0
609		75	25		1.0
611	75		25		1.0
612	25			75	1.0
613		25		75	1.0
614	75	25			1.0
615	75			25	1.0
618	75		25		1.0
619		25		75	1.0
623		25	75		1.0
626	75			25	1.0
627		25	75		1.0
628	25	75			1.0
902		37		62	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain