SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene3204

Length: 1417 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene3204

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7035	11/22
SustainPine v2.0	sp_v2.0_unigene62404	8/22

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG0724 RNA-binding proteins (RRM domain)	-	-	3.0e-09	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%
Blast2go	rna and export factor binding	-	-	0.0	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	0.0	63%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5AEG8

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 212 - 274

Fln protein: GGLPVRSTPYTIAKSFGRAKGSVWQNDMFEDSMEAFGVQLGFETGTKLYVSNLDYGVSNDDMKQLFSEVGELKRCSIHYDRSGRSKGTAEVVFSRNSDALAAMQRYNGVQLDGKPMKIEVVGTNLALPVLTGTSAGRGRGASMTGGYAGATSSRRRGGGWNWGRGLGFRRGRGRGRGRGRGRGRRNQVPDKSMEELNKELEEYHAEAMQTS*

Protein Length: 213

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGAAATCTTTGATTTGGGCGGCCCATTTTTTGGTTCCTTGGTTTTCACTTCATCTTTGCACTAAAGTATTCCCCTTCTCGCGAAGCTATTCTGCTCGAAAGGAAACATCCCAAGTTCCCAGTTAAAATACATACTAGGTTTTCAACCGAGGGTTTAGGGTTTTGAAGCCAGTGTTTGCGAGCAGGCAGTTTTTAGACCTCGAACGCAGCTCAAAGGACAGCGGATTGATCCTCGCGAAGATGGCAAACTCTCTGGATATGTCATTAGACGACCTCATTAAGAACAACAAGCCCTTCCGTGGCCGTGGCAGAGGAGGAGGAAGTGGTGGTTTTCGCAGAGGTGGTTTTCGGGGTGGTGGTGGTTTCCGCGGCGGCAGAGGCGGCGGCGGCAGCGTCGGACCTTTGCGTCACTTTGAGGAGGGCTGCCGGTTCGATCTACGCCATATACAATTGCCAAGTCTTTCGGCCGAGCCAAGGGTTCTGTTTGGCAGAATGATATGTTTGAGGATAGCATGGAAGCCTTTGGCGTGCAGCTTGGATTTGAGACTGGTACAAAATTGTACGTCTCCAATTTGGATTATGGAGTGTCCAATGACGATATGAAGCAACTGTTTTCAGAGGTTGGCGAGCTTAAACGGTGTTCAATCCATTATGATAGAAGTGGTCGTTCCAAGGGTACAGCAGAAGTGGTTTTTTCAAGGAACAGTGATGCACTTGCAGCAATGCAGAGGTACAATGGTGTCCAGCTCGATGGCAAGCCAATGAAGATTGAGGTTGTTGGTACAAACTTGGCTTTGCCTGTTTTGACTGGAACATCTGCTGGAAGAGGACGGGGAGCTTCCATGACAGGTGGATACGCAGGGGCTACTTCCTCGAGAAGAAGAGGTGGTGGCTGGAACTGGGGCCGTGGGCTTGGATTTAGGCGTGGCCGTGGTCGTGGACGGGGACGCGGAAGAGGGCGTGGCCGAAGAAACCAAGTACCTGATAAGTCTATGGAGGAACTCAATAAAGAGTTGGAAGAATATCACGCTGAAGCAATGCAAACTTCTTAA___ATTTGTAGCCTGTACAGGCAGGATCTTGTAGGAGAGGTTTTTTTTGTATTTTTGAGAGTTGTTCCAGGGAAACACACAGATGATGTAGAGAAGGTACTTTTTTTCGGTATTTATGTTGCTATCCTATCTTTTTTGCCCAGGCACAATATTTTGGATTAATCTTTTATCTTGTCAATCGGTGGGTCATCTTTAATTTTAACCTTTTAAATTTTGCTGCTGGGGTTTCCTATTACTTTTTTAAGAGGCGAGATCTTAAATTCTTTGCCTTGGAGCTTTAGTGTATCTATATTAGCATAATGATTAATTTGTACAAATATTTAACTTCTGCAAAATTGTTGACAG

Fln Alignment:

Contig3204___RSTPYTIAKSFGRAKGSVWQNDMFEDSMEAFGVQLGFETGTKLYVSNLDYGVSNDDMKQLFSEVGELKRCSIHYDRSGRSKGTAEVVFSRNSDALAAMQRYNGVQLDGKPMKIEVVGTNLALPV-----LTGTSAGRGRGASM--TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQVPDKSMEELNKELEEYHAEAMQTS
D5AEG8_______________RPSPYSIAKSFNRAKGVVWQHDMFEDSMAAIGMPIGLETGTKLYVSNLDSGVSNQDIKELFTEVGDLKSCALHYDRSGRSNGTAEVVFVKKVDAVAAVKRYNNVQLDGKPMKIELVGTGLSLPLSARVNVTGTSAGRGRRTVVMTPGFTRAAADASMEQRGGNGNWNRRRGRRSNGRGRGGRRGRGRSQVPDKSAAELDKELENYHTEAMQTS

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
143		66	33		0.997452
144		66		33	0.997452
145	66	33			0.997452
148			33	66	0.997452
150	66	33			0.997452
151	66	33			0.997452
152	66			33	0.997452
155	66		33		0.997452
158	66		33		0.997452
587	80	20			0.995493
588	80		20		0.995493
590		20		80	0.995493
595		20	80		0.995493
597		80		20	0.995493
598			20	80	0.995493
599		80	20		0.995493
601	80			20	0.995493
602	80		20		0.995493
604		20		80	0.995493
606		20	80		0.995493
607	20		80		0.995493
906	20		80		0.995493
1111		20		80	0.995493
1114	80		20		0.995493
1115	20		80		0.995493
1116		20	80		0.995493
1117	80	20			0.995493
1118			80	20	0.995493
1119	80			20	0.995493
1122		25		75	0.996473
1124			25	75	0.996473
1126		25		75	0.996473
1127	25			75	0.996473
1128		25		75	0.996473
1131		25		75	0.996473

SSRs (tot: 2)

Start position	End position	Sequence	Length
375	386	GGT GGT GGT GGT	12
402	413	GGC GGC GGC GGC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain