SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene564

Length: 1374 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene564

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3413	40/55
SustainPine v2.0	sp_v2.0_unigene21529	13/55

Source	Descriptions	Term	Type	Identity
AutoFact	Protein phosphatase 2c, putative n=1 Tax=Ricinus communis RepID=B9RL74_RICCO	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	protein phosphatase	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	80%
Blast2go	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	80%
Blast2go	plastid	GO:0009536	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2C, manganese/magnesium aspartate binding site	IPR000222	-	-
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	RNA polymerase sigma factor 54, interaction	IPR002078	-	-
Sma3	Small GTPase superfamily, Rab type	IPR003579	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3		IPR013753	-	-
Sma3		IPR014045	-	-
Sma3	Protein phosphatase 2C	IPR015655	-	-
Sma3	DNA-directed DNA polymerase, family B, conserved site	IPR017964	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A7X5

Fln msg: your sequence is shorter than subject: 260 - 300

Fln protein: RCKLPNNKVMHGFHLVKGKTRHDMEDYHVAEYRHVEDHDLGLFAIFDGHLGHGVPCYLQSNLFDNILNEPKFWTDPESAIKNAYNRTDGKILAKAADLGPGGSTAVTAILVDGKKLFVANIGDSRAVICKNGNAIQLTVDHEPSIERQNIEKKGGFVTLLPGDVPRVNGQLAVARAFGDRSLKQHLSSEPDVRDTTIDATTEFLILASDGLWKVMKNQEAVDLVRKIKDPQVAAKCLTENAVARKSKENISCIVVRFQQ*

Protein Length: 261

Fln nts: CGTTGCAAGTTACCAAACAATAAAGTAATGCATGGATTTCATTTAGTGAAGGGTAAAACAAGGCATGATATGGAGGACTACCATGTCGCAGAGTATAGGCATGTAGAAGATCATGATTTGGGGCTTTTTGCTATCTTTGACGGACATTTGGGACATGGCGTCCCATGTTACTTGCAATCAAATCTTTTTGACAACATTTTAAATGAGCCGAAGTTCTGGACAGACCCAGAAAGTGCCATCAAGAATGCATACAACCGGACTGATGGGAAAATCTTAGCAAAGGCAGCTGATTTAGGGCCCGGTGGCTCCACAGCAGTCACTGCTATTTTAGTTGATGGGAAAAAACTCTTTGTAGCAAATATAGGGGATTCCAGGGCTGTTATATGTAAAAATGGCAATGCTATTCAGCTGACTGTTGATCATGAGCCAAGTATTGAACGCCAAAACATCGAGAAGAAGGGTGGATTTGTGACACTCCTGCCAGGAGATGTACCTCGAGTTAATGGTCAGCTTGCTGTAGCTCGTGCGTTTGGTGACAGGAGCCTGAAGCAACATTTAAGTTCAGAACCAGATGTGAGAGACACAACCATAGATGCAACCACAGAATTTCTCATTTTGGCTAGTGATGGATTGTGGAAGGTCATGAAAAATCAAGAGGCTGTTGATTTGGTTAGAAAAATCAAGGACCCTCAGGTGGCAGCCAAGTGTCTGACTGAAAATGCAGTTGCAAGAAAGAGCAAAGAGAATATTTCATGCATTGTTGTGCGCTTCCAGCAGTAA___AAATGGATTTACATTTGTACCAGTGATTGGATGCAGAAATTTTCCAGAAACAGTTCGTAGATTGGTCGAACCTTCCCCTCAGTATTTTTTGGTTGAATTCCAAGCAGCATCCAATATTATAAGTATTTTCACCTTCTGCTGCTGCTTTTGCTGTACCTAGTACGAAGATTCCCCGCACTTTATAAACTCAAACGGGATGGCTAGTTTCACTTTCAAAGCCATTGAGAATTTGTTTGCTTAAATATAATTATCTTGTCATGCTTTACAGAAACATCACTGAGACATGAAAACTCAGTGAATGACCAATGGACTCTTTTGTGTTGGTGATCGTGCTACGATCAGCAATATCAAGAACTCTATTAAACCAAAGTGCCCCCTCCAGGCTCTGTACATGCTTCATGGCTGAAGCCTATATAAATATCTTAGAAATAATGGACTTCAAACCATTGCATTGGTTTCAAAATACCATGTTACTGCAGTTGTTGAAACAGTAATATTTATTTGATAGAAATAATGGACTCCTAACCATTGCATTGGTTTCAAAATGCCATGTTATTACAGTGGTTGAAACAGTAATAATTATTTAGTTAAATT

Fln Alignment:

Contig564___RCKLPNNKVMHGFHLVKGKTRHDMEDYHVAEYRHVEDHDLGLFAIFDGHLGHGVPCYLQSNLFDNILNEPKFWTDPESAIKNAYNRTDGKILAKAADLGPGGSTAVTAILVDGKKLFVANIGDSRAVICKNGNAIQLTVDHEPSIERQNIEKKGGFVTLLPGDVPRVNGQLAVARAFGDRSLKQHLSSEPDVRDTTIDATTEFLILASDGLWKVMKNQEAVDLVRKIKDPQVAAKCLTENAVARKSKENISCIVVRFQQ
D5A7X5______________RCKLPNNKVIHGFHLVKGKTRHDMEDYHVAEYRHLKDHDLGLFAIFDGHLGHGVPCYLQSNLFDNILNEPKFWTDPVGAIKNAYNWTDGKILAKAADLGPGGSTAVTAILVDGKKLFVANIGDSRAVICKSGTAIQLTVDHEPSIERQTIEKKGGFVTLLPGDVPRVNGQLAVARAFGDRSLKQHLSSEPDVRDTSIDATIEFLILASDGLWKVMKNQEAVDLVRKIKDPQVAAKCLTENAVARKSKDDISCIVVRFQQ

SNPs (tot: 45)

Position	A %	C %	G %	T %	Probability
350	20			80	0.995493
351		20		80	0.995493
352		20	80		0.995493
354	80			20	0.995493
356		80	20		0.995493
357	80	20			0.995493
358	80			20	0.995493
359	80		20		0.995493
360		14		85	0.993533
361	71	14	14		0.984337
362	14			85	0.993533
363	71	28			1.0
364			85	14	0.993533
365		14	85		0.993533
366	28		71		1.0
367		14	85		0.993533
368	85	14			0.993533
371		85	14		0.993533
373	85			14	0.993533
375		14	85		0.993533
376	14		85		0.993533
379		12	87		0.992554
380	12			87	0.992554
413		85		14	0.993533
472	85		14		0.993533
837		90		10	0.90298
840	80	20			0.999996
841	10		90		0.90298
844		10		90	0.90298
845	10		90		0.90298
846	10		90		0.90298
847		10		90	0.90298
849			90	10	0.90298
850	90			10	0.90298
851	90		10		0.90298
852		90	10		0.90298
953		88	11		0.999937
954		88		11	0.999937
957		88	11		0.999937
962			11	88	0.999937
963	88	11			0.999937
965	88			11	0.999937
966	88	11			0.999937
1246	63			9	1.0
1328	33			33	0.997753

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain