SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene530

Length: 568 nt

UniGene Fasta

>uagpf_v2_unigene530
TCAAGCAGGGACAGGTGATAGTTAAACTTAAGAGCAAACATATGGGGGGTACCTACACAAAGAAGAAAAAAAGTATTGTTTTTGACATCTGCAAAGACATTCCTGCATGGCCTGGGAGAGAATTCTCAGAGGGAGGAGAACACAAACGTTATTTTGGTCTTAAGACAGACCGTGGATTGATTCAGTTTGAATGCAAAAATGAGAAAGTGCATCAAGTATGGACTGATGGGATCTCAAAATTACTTTCTATGACACAACCACTTTCTTTGACACAACTGCGGAATTTGACATAAGATCAAGCTTTTTGTGTCAAGGAAAGGCATATTTGTTGGTGTAGGTCAATTTTCCTTTTCTATGGCAATGTTCATTTTGAAAGCCGTTTCTTTCTTGTTATGAAGGTTTCAAAATCCCAGAAAATCTCAAGTTGGCAAAGGGCTGCAAGGGTTTTCTGAGTGATAGAAATGTACAGCTGACATTTAGTAATCCGCTGGTTTGACTATCTGTGGTTCAATTGAGCAGTAGATCTGATAGTCCCATCCTGTAATATATACAACTGAGGAGTTATATG

Ace file of the UniGene uagpf_v2_unigene530

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11033	10/11
SustainPine v2.0	sp_v2.0_unigene19656	1/11

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PH_2 domain containing protein	-	-	2.0e-22	53%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	61%
Blast2go	ice binding	-	-	1.96552e-22	82%

Source	InterPros	Term	Type	Identity
Sma3		IPR000173	-	-
Sma3	Domain of unknown function DUF828	IPR008546	-	-
Sma3	Pleckstrin-like, plant	IPR013666	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9H8C5

Fln msg: your sequence is shorter than subject: 97 - 500

Fln protein: KQGQVIVKLKSKHMGGTYTKKKKSIVFDICKDIPAWPGREFSEGGEHKRYFGLKTDRGLIQFECKNEKVHQVWTDGISKLLSMTQPLSLTQLRNLT*

Protein Length: 98

Fln nts: TCAAGCAGGGACAGGTGATAGTTAAACTTAAGAGCAAACATATGGGGGGTACCTACACAAAGAAGAAAAAAAGTATTGTTTTTGACATCTGCAAAGACATTCCTGCATGGCCTGGGAGAGAATTCTCAGAGGGAGGAGAACACAAACGTTATTTTGGTCTTAAGACAGACCGTGGATTGATTCAGTTTGAATGCAAAAATGAGAAAGTGCATCAAGTATGGACTGATGGGATCTCAAAATTACTTTCTATGACACAACCACTTTCTTTGACACAACTGCGGAATTTGACATAA___GATCAAGCTTTTTGTGTCAAGGAAAGGCATATTTGTTGGTGTAGGTCAATTTTCCTTTTCTATGGCAATGTTCATTTTGAAAGCCGTTTCTTTCTTGTTATGAAGGTTTCAAAATCCCAGAAAATCTCAAGTTGGCAAAGGGCTGCAAGGGTTTTCTGAGTGATAGAAATGTACAGCTGACATTTAGTAATCCGCTGGTTTGACTATCTGTGGTTCAATTGAGCAGTAGATCTGATAGTCCCATCCTGTAATATATACAACTGAGGAGTTATATG

Fln Alignment:

Contig530___KQGQVIVKLKSKHMGGTYTKKKKSIVFDICKDIPAWPGREFSEGGEHKRYFGLKT-DRGLIQFECKNEKVHQVWTDGISKLLS
B9H8C5______________RTGQVMLKMKSRHVAGTITKKKKNIVLEVCKDMPAWPGRHLLEGGDHRRYFGLKTLARGIVEFECKNQREHDIWTQGVSRLLS

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
236	10	90			0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain