SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene525

Length: 488 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene525
GCGAACGACCACTCATGGACTCAGATACACTACCAAAATGTGAGGTTGCATGGTTATTATAATGCTAATTGGGTTGGAAGTGTGGTGGACCGCAAGATCACTTTAGGATGTTGGTTTTCTTTGGGTTCTGCTTCGATATACTGGATGAGCAAGAAGCAGAAATTGGTTACTTAAGCATTGCCAAGGCTGAATACATAGTTGCTAGTGTGACCTCCTGTGAAGTTGTCTGGTTGAGGAAGCTCTTCAGTGAGTTGTTTGGACATGTGTTGGATACCACCGTGATCCTCTGCAACAACTAGAGTGGGATCAGATTATCAAAGAATCTTGTATTTCATGATCGCTCCAAGCACATAGATATCAGGTACCACTTTATCTGGGATGTGGTACAATGAGGAGCAATAAGGCTCCATCACATTAGGACTAATGAGCAGGTCACTGATATTTTGAGAAAGCCCCTTGGGAAGGTAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene uagpf_v2_unigene525 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene26593	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os07g0434200 protein (Fragment) n=2 Tax=Oryza sativa RepID=Q0D6W3_ORYSJ	-	-	6.0e-26	47%
FL-Next	sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco).	-	-	0.0	39%
Blast2go	retrotransposon unclassified	-	-	1.18017e-25	65%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: P10978

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 111 aas, putative chimeric sequence, your sequence is shorter than subject: 58 - 1328

Fln protein: ANDHSWTQIHYQNVRLHGYYNANWVGSVVDRKITLGCWFSLGSASIYWMSKKQKLVT*

Protein Length: 59

Fln nts: GCGAACGACCACTCATGGACTCAGATACACTACCAAAATGTGAGGTTGCATGGTTATTATAATGCTAATTGGGTTGGAAGTGTGGTGGACCGCAAGATCACTTTAGGATGTTGGTTTTCTTTGGGTTCTGCTTCGATATACTGGATGAGCAAGAAGCAGAAATTGGTTACTTAA___GCATTGCCAAGGCTGAATACATAGTTGCTAGTGTGACCTCCTGTGAAGTTGTCTGGTTGAGGAAGCTCTTCAGTGAGTTGTTTGGACATGTGTTGGATACCACCGTGATCCTCTGCAACAACTAGAGTGGGATCAGATTATCAAAGAATCTTGTATTTCATGATCGCTCCAAGCACATAGATATCAGGTACCACTTTATCTGGGATGTGGTACAATGAGGAGCAATAAGGCTCCATCACATTAGGACTAATGAGCAGGTCACTGATATTTTGAGAAAGCCCCTTGGGAAGGTAGTGACAGCCAAGGTCACGACG

Fln Alignment:

Contig525___LHGYYNANWVGSVVDRKITLGCWFSLGSASIYWMSKKQKLV
P10978______________LKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCV

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
246	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain