SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene289

Length: 1183 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene289

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7820	17/23
SustainPine v2.0	sp_v2.0_unigene19404	1/23

Source	Descriptions	Term	Type	Identity
AutoFact	Nuclear transcription factor Y subunit C-2 n=2 Tax=Arabidopsis RepID=NFYC2_ARATH	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	76%
Blast2go	nuclear transcription factor y subunit c-2	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	79%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	79%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	79%
Blast2go	protein binding	GO:0005515	Molecular Function	79%
Blast2go	cytoplasm	GO:0005737	Cellular Component	79%
Blast2go	CCAAT-binding factor complex	GO:0016602	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Tobamoviral movement protein	IPR001022	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Transcription factor CBF/NF-Y/archaeal histone	IPR003958	-	-
Sma3	Mlo-related protein	IPR004326	-	-
Sma3	Major pollen allergen Lol pI	IPR005795	-	-
Sma3	Pollen allergen/expansin, C-terminal	IPR007117	-	-
Sma3	Histone-fold	IPR009072	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9P2N7

Fln msg: STOP codon was not found. Distance to subject end: 171 aas, your sequence is longer than subject: 341 - 89

Fln protein: MQQQQRLLQQPNPMQQELQRLQTTGGLLQQQQQPSSIEQQKQLLQPRGLPEGSSTSMESSGQTGQPTPADWQEKVYQRLQTLKEMYFLEIKDLFNKLQTKCQQPMQPDQSEKLKHYKTTLHRMMAYFQVPKSSIPPGFKEDKVDAFEKQIQAILNSFTQRKSAPQQQQGQQQLPSQVNNQVQSMQPQEKHVNPLQQMNLQPSVTSMQPNSTTPIQHSSMPLLQQSGGQTSHQNIRTTMQSATNLNASQGSGVTSLQQSSLNHLQHNNNINSLQQNNAPLQQNNISSLQQNGMNSLQQNNINALQQHHQVLKQQEMMQAQAQQLKIHQQQHFQYQLSQQQLQ

Protein Length: 342

Fln nts: GTGACCTTGGCTGTCACTCAAATTCACCAGCTTTTGCAATCCAAACATCAGCCAACACAGCAGACATCATCATCACTATTACAATCACAATCCCAGCAGTTGCAGCAACAGTCACAACAGCAGCAGCTTCTCTCTCAGCTCCAATCTCAGACCCAACCA_-_ATGCAGCAACAGCAGCGACTGTTACAGCAACCAAATCCAATGCAGCAAGAGCTGCAAAGGCTTCAGACAACTGGTGGTTTGTTGCAGCAGCAGCAGCAACCGAGCTCTATTGAACAACAAAAGCAGCTATTACAACCGCGCGGTCTGCCAGAGGGCTCTTCAACATCAATGGAATCATCAGGTCAAACTGGACAACCAACTCCTGCTGACTGGCAAGAGAAGGTTTATCAGAGACTACAAACTCTGAAGGAGATGTATTTTCTAGAGATAAAAGATTTGTTTAACAAACTTCAAACGAAATGTCAGCAGCCCATGCAACCTGATCAATCCGAAAAGCTTAAGCACTACAAAACTACTTTGCACCGTATGATGGCATATTTTCAAGTTCCAAAGAGCAGTATTCCACCAGGGTTTAAAGAAGACAAGGTTGATGCTTTCGAGAAACAGATTCAAGCCATTCTGAACTCGTTTACGCAGAGGAAATCTGCTCCACAACAACAACAGGGACAGCAACAACTTCCAAGCCAAGTTAACAACCAAGTGCAATCTATGCAACCACAAGAGAAGCATGTTAATCCACTCCAACAGATGAATTTACAGCCTTCGGTTACTTCAATGCAACCAAACAGCACGACACCTATTCAGCACAGTTCCATGCCTCTGTTACAGCAATCTGGTGGACAAACATCACACCAAAATATTCGTACTACAATGCAGTCTGCCACCAATCTAAATGCATCGCAAGGAAGTGGTGTAACTTCCTTGCAGCAGAGTTCATTAAACCATCTTCAACATAATAATAATATTAATTCTCTTCAGCAAAATAATGCTCCTCTTCAGCAGAATAATATTAGCTCCTTACAGCAGAATGGCATGAATTCTCTACAACAAAATAATATAAATGCTCTGCAACAACACCACCAAGTTCTAAAGCAGCAAGAAATGATGCAAGCACAAGCACAACAACTTAAGATACATCAGCAGCAGCATTTTCAATATCAGTTGTCGCAACAGCAGCTGCAGT

Fln Alignment:

Contig289___LKEMYFLEIKDLFNKLQTKCQQPMQPDQSEKLKHYKTTLHRMMAYFQVPKSSIPPGFKEDKVDAFEKQIQAILNSFTQRKSA
A9P2N7______________MKEMYYPEIKELFTKLSNKCQQPMAPDQFEKLKHYKTTLQRVMAYFKVQKSSIPPGFKEDKVDSFERQIQAILGSFKKRHSA

SNPs (tot: 73)

Position	A %	C %	G %	T %	Probability
293	75		25		0.996473
294	75			25	0.996473
297		75		25	0.996473
301		25	75		0.996473
302		75		25	0.996473
303		16	66	16	0.988813
305			16	83	0.994512
309		83		16	0.994512
311	83		16		0.994512
312		16	83		0.994512
313	66	16		16	0.988813
314		16	66	16	0.988813
315	16		83		0.994512
316			83	16	0.994512
318	16			83	0.994512
321		16		83	0.994512
322	16	83			0.994512
478	83		16		0.994512
479	83			16	0.994512
481		83	16		0.994512
485		16		83	0.994512
487	83			16	0.994512
488	83			16	0.994512
489			16	83	0.994512
490		83	16		0.994512
492			83	16	0.994512
493	83		16		0.994512
494	83			16	0.994512
495	83	16			0.994512
500		16		83	0.994512
558	87	12			0.992554
561	87	12			0.992554
562			12	87	0.992554
565		87	12		0.992554
569	87			12	0.992554
572		16	83		0.994512
574			16	83	0.994512
576	83	16			0.994512
578	83	16			0.994512
579			83	16	0.994512
580	83	16			0.994512
599		33		66	1.0
614	40		60		1.0
634	60	40			1.0
645			60	40	1.0
648		60	40		1.0
653	40			60	1.0
655	40	60			1.0
662	50		50		1.0
676	83		16		0.999991
677	83			16	0.999991
680	16			83	0.999991
683	81			18	0.999994
684	81			18	0.999994
686		81	18		0.999994
689	81			18	0.999994
692		18		81	0.999994
694	81			18	0.999994
767	36		63		1.0
792	66		33		1.0
793		66		33	1.0
818		25	75		1.0
842	90	10			0.90298
844	88			11	0.923564
845	88		11		0.923564
846	88		11		0.923564
848	85		14		0.993533
864		57		42	1.0
872	57		42		1.0
909	66			33	1.0
1002	40	60			1.0
1018		60		40	1.0
1127	66			33	0.997452

SSRs (tot: 3)

Start position	End position	Sequence	Length
243	257	GCA GCA GCA GCA GCA	15
651	662	ACA ACA ACA ACA	12
953	964	ATA ATA ATA ATA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain