SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene276

Length: 655 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene276

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9189	2/37
SustainPine v2.0	sp_v2.0_unigene25886	11/37
SustainPine v2.0	sp_v2.0_unigene28462	22/37

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: similar to ACA1 (autoinhibited Ca2+ -ATPase 1); calmodulin binding isoform 1 n=1 Tax=Vitis vinifera RepID=UPI00015C9686	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	47%
Blast2go	plasma membrane-type calcium atpase	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	Calcium-transporting ATPase.	EC:3.6.3.8	-	0.0	89%

Source	GOs	Term	Type	Identity
Blast2go	calcium ion transmembrane transport	GO:0070588	Biological Process	89%
Blast2go	response to carbon dioxide	GO:0010037	Biological Process	89%
Blast2go	calcium-transporting ATPase activity	GO:0005388	Molecular Function	89%
Blast2go	calmodulin binding	GO:0005516	Molecular Function	89%
Blast2go	endoplasmic reticulum membrane	GO:0005789	Cellular Component	89%
Blast2go	plasma membrane	GO:0005886	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	ATPase, P-type, H+ transporting proton pump	IPR000695	-	-
Sma3	DNA-repair protein, UmuC-like	IPR001126	-	-
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	ATPase, P-type cation-transporter, N-terminal	IPR004014	-	-
Sma3	ATPase, P-type, calcium-transporting	IPR005782	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	ATPase, P-type cation-transporter, C-terminal	IPR006068	-	-
Sma3	ATPase, P-type cation exchange, alpha subunit	IPR006069	-	-
Sma3	ATPase, P-type, calcium-transporting, PMCA-type	IPR006408	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	DNA-repair protein, UmuC-like, N-terminal	IPR017963	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Full-Lengther Next Prediction

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
72		70		30	1.0
73	10		90		0.90298
74			20	60	0.999999
75		60	30		1.0
78		40	60		1.0
79	60			40	1.0
80		60		40	1.0
82	38		15	46	1.0
84		11	88		0.999937
89		9		90	0.999872
91	90			9	0.999872
94			9	90	0.999872
97			9	90	0.999872
99		9		90	0.999872
105		9		90	0.999842
106	9		90		0.999842
154	91	8			0.999766
155			8	91	0.999766
157		91	8		0.999766
158	8	91			0.999766
163	91		8		0.999766
166		91	8		0.999766
167	91			8	0.999766
168		8	91		0.999766
173	86	13			1.0
176		13	86		1.0
179	13			86	1.0
180		13		86	1.0
183		86		13	1.0
184	86		13		1.0
192		3	86		1.0
194		10		86	1.0
493	90	10			0.90298
497		10		90	0.90298
498	90		10		0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain