SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene220

Length: 294 nt

UniGene Fasta

>uagpf_v2_unigene220
GTCGTGACCTTGGCTGTCACTCATTGTGCCAGGAACCACCACAGCTCTCAGAACCTTCCAGCCCCTTGAAAGATTTACTTCGGGCCTTATTGGTGAAGGAGCCCACTCTCAGATTGGGGTTCAACTCTGGTGCGCAGGAGATTAAGAATCACAAATTCTTTGAGGGTGTTAGATGGGATGAGTTAGAATATGTGTATAGACCCCCCTTTTGTTCCTCTTCCTTTCAGTTTTTGAGCATTCGTGCATGGTATTGGATGATAATGTACATACAATTGAAATGTTTGAGAAATTTTT

Ace file of the UniGene uagpf_v2_unigene220

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6042	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	[RTKL] COG0515 Serine/threonine protein kinase	-	-	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	serine threonine protein kinase oxi1	-	-	61%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	61%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	61%
Blast2go	blue light signaling pathway	GO:0009785	Biological Process	61%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	61%
Blast2go	identical protein binding	GO:0042802	Molecular Function	61%
Blast2go	ATP binding	GO:0005524	Molecular Function	61%
Blast2go	FMN binding	GO:0010181	Molecular Function	61%

Source	InterPros	Term	Type	Identity
Sma3	PAS	IPR000014	-	-
Sma3	PAS-associated, C-terminal	IPR000700	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	AGC-kinase, C-terminal	IPR000961	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Phytochrome	IPR001294	-	-
Sma3	PAC motif	IPR001610	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	GAF domain	IPR003018	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Phytochrome, central region	IPR013515	-	-
Sma3	Phytochrome chromophore binding site	IPR013516	-	-
Sma3	PAS fold-2	IPR013654	-	-
Sma3	PAS fold-3	IPR013655	-	-
Sma3	PAS fold	IPR013767	-	-
Sma3	Phytochrome chromophore attachment domain	IPR016132	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NPF9

Fln msg: Overlapping hits, possible frame ERROR between 230 and 230, STOP codon was not found. Distance to subject end: 1 aas, your sequence is shorter than subject: 97 - 385

Fln protein: RDLGCHSLCQEPPQLSEPSSPLKDLLRALLVKEPTLRLGFNSGAQEIKNHKFFEGVRWDELEYVYRPPFCSSSFQxxEHSCMVLDDNVHTIEMFEKF

Protein Length: 98

Fln nts: GTCGTGACCTTGGCTGTCACTCATTGTGCCAGGAACCACCACAGCTCTCAGAACCTTCCAGCCCCTTGAAAGATTTACTTCGGGCCTTATTGGTGAAGGAGCCCACTCTCAGATTGGGGTTCAACTCTGGTGCGCAGGAGATTAAGAATCACAAATTCTTTGAGGGTGTTAGATGGGATGAGTTAGAATATGTGTATAGACCCCCCTTTTGTTCCTCTTCCTTTCAGxxxxxxGAGCATTCGTGCATGGTATTGGATGATAATGTACATACAATTGAAATGTTTGAGAAATTTTT

Fln Alignment:

Contig220___KDLLRALLVKEPTLRLGFNSGAQEIKNHKFFEGVRWDELEYVYRPPFCSSSFQxEHSCMVLDDNVHTIEMFEKF
A9NPF9______________KDLLRRLLVKEPTLRLGFNSGAQEIKNHEFFEGVRWDELEYVSRPPFVPPPFSxEHSRIVMDDSVHTIEMFENF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain