SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene148

Length: 830 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene148

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21724	26/29

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Picea sitchensis RepID=A9NUT3_PICSI	-	-	93%
FL-Next	sp=Ubiquitin carboxyl-terminal hydrolase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	ubiquitin carboxyl-terminal hydrolase 6	-	-	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	ubiquitin-specific protease activity	GO:0004843	Molecular Function	0.0	83%
Blast2go	calmodulin binding	GO:0005516	Molecular Function	0.0	83%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site	IPR018200	-	-
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2	IPR001394	-	-
Sma3	Ubiquitin	IPR000626	-	-

Full-Lengther Next Prediction

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
114	14			85	0.993533
151		12	87		0.992554
153			87	12	0.992554
158		12	87		0.992554
163	77			22	0.999999
165	88			11	0.923564
166		22		77	0.999999
167	11	11		77	0.968132
168		88		11	0.923564
169	77			22	0.999999
170		11	88		0.923564
171	11		88		0.923564
172	88	11			0.923564
173		88		11	0.923564
174	88		11		0.923564
176		11		88	0.923564
179		11	88		0.923564
180	11			88	0.923564
259	78	15	5		1.0
262	77	5		16	1.0
263	83	11	5		0.999887
352	92		8		0.999718
359		9		90	0.999842
364			6	75	1.0
522		37	62		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain