SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene26713

Length: 281 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene26713
AATGTGCTCAGACACTATTGACAACGTCAAGGCCAATGCAAAGGCGAAGATCCAGGACAAGGAGGGAATTCCTCCTGATCAGCAGAGGCTCATTTTCGCTGGAAAACAGCTTGAGGATGAACGAACACTCGCAGATTACAACATCCAGAAGGAATCGACTCTTCACCTTGTTCTCCGTCTAAGAGGGGAATGCAGATCTTTGTCAAGACACTCACTGGGAAGACTATCACTCTGGAAGTCGAAAGCTCTGATACAATTGACAATGTCAAGACCAAAACATT

Ace file of the UniGene biog3_v1.0_unigene26713 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene20872	1/3
SustainPine v2.0	sp_v2.0_unigene20883	1/3
SustainPine v2.0	sp_v2.0_unigene24767	1/3

Source	Descriptions	Term	Type	Identity
AutoFact	polyubiquitin [Volvox carteri f. nagariensis]	-	-	97%
FL-Next	tr=Polyubiquitin; Pinus sylvestris (Scots pine).	-	-	91%
Blast2go	polyubiquitin 3	-	-	96%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to UV-B	GO:0010224	Biological Process	0.0	96%
Blast2go	vacuole	GO:0005773	Cellular Component	0.0	96%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ubiquitin	IPR000626	-	0.0	-
Sma3	Ribosomal protein L40e	IPR001975	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q41067

Fln msg: ERROR#3, very serious frame error, warning!, putative chimeric sequence! or repetitive structure STOP codon was not found. Distance to subject end: 0 aas, your sequence is shorter than subject: 93 - 761

Fln protein: MCSDTIDNVKANAKAKIQDKEGIPPDQQRLIFAGKQLEDERTLADYNIQKESTLHLVLRLRxxMQIFVKTLTGKTITLEVESSDTIDNVKTKT

Protein Length: 94

Fln nts: AATGTGCTCAGACACTATTGACAACGTCAAGGCCAATGCAAAGGCGAAGATCCAGGACAAGGAGGGAATTCCTCCTGATCAGCAGAGGCTCATTTTCGCTGGAAAACAGCTTGAGGATGAACGAACACTCGCAGATTACAACATCCAGAAGGAATCGACTCTTCACCTTGTTCTCCGTCTAAGAxxxxxxATGCAGATCTTTGTCAAGACACTCACTGGGAAGACTATCACTCTGGAAGTCGAAAGCTCTGATACAATTGACAATGTCAAGACCAAAACATT

Fln Alignment:

biogeco3_mira_rep_c32518___xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Q41067__________________xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
102		33	33	33	0.997745

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain