SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene26709

Length: 219 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene26709
AATGTCTTGCACCTTGTGCTCCGAATGAAGGCGGCATGCAAATATTTGTTAAAACCCACACTGGCAAGACAATAACTTTGGAGGTTGAGAGCTCAGACACCATTGACAATGTCAAGGCCAAGATACAGGATAAGGAAGGCATCCCCCTGACCAGCAGCGCCTGATCTTTGCTGGAAAGCAGCTTGAAGACGGGCGAACACTTGCTGGATTATAATATAC

Ace file of the UniGene biog3_v1.0_unigene26709 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16151	7/7

Source	Descriptions	Term	Type	Identity
AutoFact	polyubiquitin containing 7 ubiquitin monomers [Zea mays]	-	-	92%
FL-Next	tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa).	-	-	71%
Blast2go	ubiquitin	-	-	96%

Source	GOs	Term	Type	Identity
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	96%
Blast2go	aging	GO:0007568	Biological Process	96%
Blast2go	cellular protein metabolic process	GO:0044267	Biological Process	96%
Blast2go	intracellular part	GO:0044424	Cellular Component	96%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ubiquitin	IPR000626	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q7FPA4

Fln msg: Distance to subject end: 16 aas, your sequence is shorter than subject: 61 - 229

Fln protein: MQIFVKTHTGKTITLEVESSDTIDNVKAKIQDKEGIPLTSSA*SLLESSLKTGEHLLDYNI

Protein Length: 62

Fln nts: AATGTCTTGCACCTTGTGCTCCGAATGAAGGCGGC_-_ATGCAAATATTTGTTAAAACCCACACTGGCAAGACAATAACTTTGGAGGTTGAGAGCTCAGACACCATTGACAATGTCAAGGCCAAGATACAGGATAAGGAAGGCATCCCCCTGACCAGCAGCGCCTGATCTTTGCTGGAAAGCAGCTTGAAGACGGGCGAACACTTGCTGGATTATAATATAC

Fln Alignment:

biogeco3_mira_rep_c32497___GGMQIFVKTHTGKTITLEVESSDTIDNVKAKIQDKEGIPXXXXXXXXXXXXLKTGEHLLDYNI
Q7FPA4__________________GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
138		83		16	0.994512
158	20	80			0.995493
161			80	20	0.995493
164	50			50	1.0
165	33		66		0.997457
189		66		33	0.997453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain