SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene26706

Length: 268 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene26706
GGGAGTTCATGGACACTTTTTTACCTAAGAGGCCTGAGGAGATTGGAGCTGGTGACCAGGGTCACATGTTTGGATATGCAACTGATGAGACCCCCGAGCTGATGCCTCTCACTCATGTGCTAGCAACAAAGCTTGGAGCACGGCTGACTGAAGTAAGAAAGAATGGAACCTGCCCTTGGTTGAGACCAGATGGAAAGACCCAAGTTACTGTTGAGTATAAAAATGAGGGAGGGGCAATGGTCCCGTTAAGAGTTCACACTGTTACATT

Ace file of the UniGene biog3_v1.0_unigene26706 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16107	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	S-adenosylmethionine synthase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TJH4_PHYPA	-	-	82%
FL-Next	sp=S-adenosylmethionine synthase 1; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	s-adenosylmethionine synthase-like isoform 1	-	-	94%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Peptidase S14, ClpP	IPR001907	-	-
Sma3	S-adenosylmethionine synthetase	IPR002133	-	-
Sma3	RNA polymerase Rpb7, N-terminal	IPR005576	-	-
Sma3	Pectinesterase inhibitor	IPR006501	-	-
Sma3	RNA polymerase III, subunit Rpc25	IPR013238	-	-
Sma3	Heavy-metal-associated, conserved site	IPR017969	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUH8

Fln msg: Distance to subject end: 200 aas, your sequence is shorter than subject: 88 - 393

Fln protein: EFMDTFLPKRPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGARLTEVRKNGTCPWLRPDGKTQVTVEYKNEGGAMVPLRVHTVT

Protein Length: 89

Fln nts: GGGAGTTCATGGACACTTTTTTACCTAAGAGGCCTGAGGAGATTGGAGCTGGTGACCAGGGTCACATGTTTGGATATGCAACTGATGAGACCCCCGAGCTGATGCCTCTCACTCATGTGCTAGCAACAAAGCTTGGAGCACGGCTGACTGAAGTAAGAAAGAATGGAACCTGCCCTTGGTTGAGACCAGATGGAAAGACCCAAGTTACTGTTGAGTATAAAAATGAGGGAGGGGCAATGGTCCCGTTAAGAGTTCACACTGTTACATT

Fln Alignment:

biogeco3_mira_rep_c32489___LPKRPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGARLTEVRKNGTCPWLRPDGKTQVTVEYKNEGGAMVPLRVHTV
A9NUH8__________________LTKKPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGARLTEVRKDGTCPWLRPDGKTQVTVEYKNEGGAMVPLRVHTV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain