SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene26655

Length: 244 nt

UniGene Fasta

>biog3_v1.0_unigene26655
AATGTCCAATGGCTCTACTTTCTGTCGCGCCCTTGGCTTCCAGATCGCGCCTTCACGAAACGTTGATCACTTCTGCTCATTACCTTAAGCCTTTCCCTCGTTGCGTTTCCGGTATGTCTTTCCCAACAGATAGAATACTTTATGGAGTATGGTTGGCATACAAATCTTCCACGACTGGAAGCAAGGCACTACATGGACGCATTTGGATCTGATGAGATGCCATGGATGCCATATATGAATACCG

Ace file of the UniGene biog3_v1.0_unigene26655

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3435	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	1,8-cineole synthase n=3 Tax=Picea RepID=C0PT35_PICSI	-	-	74%
FL-Next	tr=Beta-phellandrene synthase-like protein; Picea abies (Norway spruce) (Picea excelsa).	-	-	65%
Blast2go	linalool synthase	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Pinene synthase.	EC:4.2.3.14	-	0.0	80%

Source	KEGGs	Term	Identity
Blast2go	Monoterpenoid biosynthesis	00902	80%
Blast2go	Biosynthesis of terpenoids and steroids	01062	80%
Blast2go	Metabolic pathways	01100	80%
Blast2go	Biosynthesis of secondary metabolites	01110	80%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	80%
Blast2go	pinene synthase activity	GO:0050550	Molecular Function	80%
Blast2go	magnesium ion binding	GO:0000287	Molecular Function	80%
Blast2go	chloroplast	GO:0009507	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	Prenyltransferase/squalene oxidase	IPR001330	-	-
Sma3	Terpene synthase-like	IPR001906	-	-
Sma3	Terpene synthase, metal-binding domain	IPR005630	-	-
Sma3	Terpenoid synthase	IPR008949	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q94KA5

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 332 aas, your sequence is shorter than subject: 81 - 634

Fln protein: NVQWLYFLSRPWLPDRAFTKR*SLLLITLSLSLVAFPVCLSQQIEYFMEYGWHTNLPRLEARHYMDAFGSDEMPWMPYMNT

Protein Length: 82

Fln nts: AATGTCCAATGGCTCTACTTTCTGTCGCGCCCTTGGCTTCCAGATCGCGCCTTCACGAAACGTTGATCACTTCTGCTCATTACCTTAAGCCTTTCCCTCGTTGCGTTTCCGGTATGTCTTTCCCAACAGATAGAATACTTTATGGAGTATGGTTGGCATACAAATCTTCCACGACTGGAAGCAAGGCACTACATGGACGCATTTGGATCTGATGAGATGCCATGGATGCCATATATGAATACCG

Fln Alignment:

biogeco3_mira_rep_c32203___PVC-LSQQIEYFMEYGWHTNLPRLEARHYMDAFGSDEMPWM
Q94KA5__________________PDCSLSQEIAYALEYGWHTNMPRLEARNYMDVFGHPSSPWL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain