SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene26622

Length: 1031 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene26622

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23796	2/20
SustainPine v2.0	sp_v2.0_unigene23872	18/20

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF716 domain containing protein	-	-	2.8026e-45	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	36%
Blast2go	protein	-	-	0.0	64%

Source	InterPros	Term	Type	Identity
Sma3	Protease inhibitor I4, serpin	IPR000215	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Protein of unknown function DUF716, TMEM45	IPR006904	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NX20

Fln msg: STOP codon was not found. Distance to subject end: 18 aas,

Fln protein: MGTFIGHVAPGMGFLLIGLWHLYNTFTNYAHSPWDFQTRPWFPVEFRKGKFKYAELVALIAGSCLSISAELFIGPEKHQPLADDWSIPPEHLNNFEHSSIALFFLIYASVALFTEVRRLIVPPGALHVMAALAFGKELLLFHLHSADHMGPEGHYHWLLQLIVFVSLSTTLLEIPFQQSFLLATVRSVSVLLQGAWFLNMAFMLWIPPFAAKGCRMERINDHDVFKCTSQEATMRAKALANLQFNWYVAGIVLFTIVFYAKVTGQRAEGEVTYQSLAAKAVTNHDMELRSTDKEGGCAGKLRSINGSNSSH

Protein Length: 312

Fln nts: CGGGATGCTAGAAGGCGATCAATTTCATTCCCTGCCTTCAATCCTTTTCTGATTTGCTTCTGCTACTCACCCATCACCCTGTGAGTTTATTTTGGTT_-_ATGGGGACATTTATAGGCCATGTGGCACCGGGGATGGGCTTTCTGCTCATCGGTCTCTGGCACCTCTACAATACATTCACAAATTACGCGCACTCTCCATGGGACTTCCAGACTCGGCCCTGGTTCCCTGTTGAATTCCGCAAAGGAAAGTTCAAGTATGCGGAGCTAGTGGCCCTTATAGCGGGGTCCTGTTTATCAATTTCGGCGGAGCTGTTCATCGGGCCGGAGAAGCACCAACCCCTCGCAGACGACTGGAGCATCCCACCGGAGCACCTCAACAACTTCGAGCACTCTTCCATTGCGTTGTTCTTTCTAATCTACGCCTCCGTGGCTCTGTTCACTGAGGTACGAAGGCTCATAGTTCCACCGGGGGCGTTGCACGTGATGGCGGCGCTGGCCTTCGGGAAGGAGCTCCTGCTCTTCCACCTCCACTCCGCTGACCACATGGGGCCCGAGGGGCACTACCACTGGCTCCTCCAGCTCATAGTCTTCGTCAGTTTGTCGACCACGCTGCTCGAGATTCCGTTCCAACAGAGTTTTCTGCTAGCAACGGTGCGCTCCGTGTCGGTGCTGTTGCAGGGAGCGTGGTTCCTCAACATGGCTTTCATGCTCTGGATCCCGCCTTTCGCCGCTAAGGGTTGCCGGATGGAGCGCATCAACGACCACGATGTGTTCAAGTGCACCAGCCAGGAAGCAACTATGCGGGCCAAGGCGCTCGCTAACTTACAATTCAACTGGTACGTGGCCGGCATAGTGTTGTTCACGATCGTTTTCTATGCCAAGGTGACCGGGCAGCGAGCCGAGGGTGAAGTCACTTATCAGTCCCTGGCGGCTAAGGCCGTGACTAACCACGATATGGAACTGCGAAGCACCGATAAGGAGGGTGGCTGTGCAGGAAAGCTGCGATCGATCAATGGATCCAACAGCTCACATT

Fln Alignment:

biogeco3_mira_rep_c31952___MGTFIGHVAPGMGFLLIGLWHLYNTFTNYAHSPWDFQTRPWFPVEFRKGKFKYAELVALIAGSCLSISAELFIGPEKHQPLADDWSIPPEHLNNFEHSSIALFFLIYASVALFTE-VRRLIVPPGALHVMAALAFGKELLLFHLHSADHMGPEGHYHWLLQLIVFVSLSTTLLEIPFQQSFLLATVRSVSVLLQGAWFLNMAFMLWIPPFAAKGCRMERINDHDVFKCTSQEATMRAKALANLQFNWYVAGIVLFTIVFYAKVTGQRAEGEVTYQS
A9NX20__________________MGSFKGHVLPGSLFLLVGLWHIWNSVMKYVANPKSHRVRIWHPVPGISSNLKYLEIYIIVIGSFVDMCIEFFYST--HLKFVVDGTLNPSHMNDFEHAGMLLMFFILGVTVLISEKTRYLPLPHGVLEIIAAMAFFAEYLLFNFHSTSHAGLEGRYHQLLVLLVGLCVMSAVLAAAFPKSFVVDLLGGITFTLQGTWFYQVAFALY-GPMMPTGCSIE---DHEIV-CQSREFEIRGQLLANFQLGVIVLSL-LTMVVFLFGFAASRCGHPSLYQS

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
581	40	60			1.0
709		14		85	0.993533
730	14			85	0.993533
734	12		87		0.992554
735	12	87			0.992554
736		87		12	0.992554
738		87		12	0.992554
790	25	75			1.0
816	71	28			1.0
841	60		40		1.0
842		60		40	1.0
854		66		33	1.0
863		50		50	1.0
864	16		83		0.994512
885		50		50	1.0
899	50		50		1.0
903		50	50		1.0
914		50	50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain