SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene26612

Length: 441 nt

UniGene Fasta

>biog3_v1.0_unigene26612
AATGTGGATTTACAGTGAAGACCACTTTGCAGACTGGTCTGCGACGGGCTTTGTCCTCGAGTAGTTGCGATGAGACTTACGGTTTCATGCCATGTACTACATCATTAGTGGGAAACTTGTTTTTGCTGGTGGTTTATGGATACCTAATGTTCCAGGCGGCCACATTTATGTCTAATGGAAGCGAGCTGCTGTTGTCTGTGATGGGACCTGGTATAATTGGGGGCTTGTTTTTACCTATTCTCGGAGCTTTTCCGGATGTCTGCTGATCTTTGTGTCTGGTCTATCTGGAAGTAAGACAACTGCGCAATCACAAGTGCTGATTGGAATGGGGTTGCTTGCTGGTTCAACTGTAATGTTATTGACAGCATTGTGGGGGGCATGTACGATTGTCGGCAAATGTGATCTTTCTGAAGATAATGTTGCCATTGATGGGAAGGATAC

Ace file of the UniGene biog3_v1.0_unigene26612

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4460	1/2
SustainPine v2.0	sp_v2.0_unigene12595	1/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam01699, Na_Ca_ex, Sodium/calcium exchanger protein	-	-	8.0e-17	23%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	53%
Blast2go	sodium calcium exchanger family protein	-	-	0.0	73%

Source	GOs	Term	Type	Identity
Blast2go	calcium ion binding	GO:0005509	Molecular Function	73%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	73%
Blast2go	plant-type vacuole	GO:0000325	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	SEC7-like	IPR000904	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	Sodium/calcium exchanger membrane region	IPR004837	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Sperm-activating peptide	IPR013254	-	-
Sma3	Calcium binding protein	IPR015754	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9GGG0

Fln msg: Separated hits, possible frame ERROR between 203 and 221, Distance to subject end: 394 aas, your sequence is shorter than subject: 146 - 591

Fln protein: CGFTVKTTLQTGLRRALSSSSCDETYGFMPCTTSLVGNLFLLVVYGYLMFQAATFMSNGSELLLSVxxxxxxxGLVFTYSRSFSGCLLIFVSGLSGSKTTAQSQVLIGMGLLAGSTVMLLTALWGACTIVGKCDLSEDNVAIDGKD

Protein Length: 147

Fln nts: AATGTGGATTTACAGTGAAGACCACTTTGCAGACTGGTCTGCGACGGGCTTTGTCCTCGAGTAGTTGCGATGAGACTTACGGTTTCATGCCATGTACTACATCATTAGTGGGAAACTTGTTTTTGCTGGTGGTTTATGGATACCTAATGTTCCAGGCGGCCACATTTATGTCTAATGGAAGCGAGCTGCTGTTGTCTGTGATxxxxxxxxxxxxxxxxxxGGGGCTTGTTTTTACCTATTCTCGGAGCTTTTCCGGATGTCTGCTGATCTTTGTGTCTGGTCTATCTGGAAGTAAGACAACTGCGCAATCACAAGTGCTGATTGGAATGGGGTTGCTTGCTGGTTCAACTGTAATGTTATTGACAGCATTGTGGGGGGCATGTACGATTGTCGGCAAATGTGATCTTTCTGAAGATAATGTTGCCATTGATGGGAAGGATAC

Fln Alignment:

biogeco3_mira_rep_c31895___TVKTTLQTGLRRALSSSS---CDETYGFMPCTTSLVGNLFLLVVYGYLMFQAATFMSNGSELLLSVMxxxxxxGLVFTYSRSFSGCLLIFVSGLSGSKTTAQSQVLIGMGLLAGSTVMLLTALWGACTIVGKCDLSE-DNVAIDGKD
B9GGG0__________________SLNQTTSSPFHLALKSSAEETCEQTYGFLPCTTTVIGNLFLILVYGYLMFFAATYLSSGSELLLQILxxxxxxGLFLPVLGALPDALLILVSGLSGSTETAQSQVSVGMGLLAGSTVMLLTVIWGSCVVVGKCDMSETENSAIDRKD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain