SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene26611

Length: 570 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene26611
AATGTCATTTGTGCCAAGACATCAGTTGATCAAACAAATGCCGAATTGTAGGGTTTATTAGACTGTCGACATTAAGTTATTGCCAGAAAAGGAAAATTTAAAGATGGCTAAAAACTCTCAGCTCTCATTGCTACTGTTTTTTCGTTTTCTTGAAGCATTAGTGTGCTTAAGTGTTCTTTTGACCTTCGTTGCAGCAGAAGATGGTCTGCTGGTGAATGGAAACTTTGAAAAGGCGGGGATCGAGAATAGAACATCACGGGCAGGCGAGATGGAATATGTAAATGACGGGGAGAGGCAGGGCAGCATGTACCTGGTTGTTCCTGAAGGTAAGCATGCCGTGAGGCTGGGCAACGACGCCCAGATCAGCCAACAGATCAGTGTCCAGAAAGGGTCGACATATTCTCTCACATTTAGCGCGGCGCGAACCTGTGCGCAGATGGAATCGCTCAACGTTTCTGTGCCTCCGTCTACTAGGAACGTAGATTTGCAGACTCTGTATAATATTTATGGCTGGGACACCTATGCCTGGGCTTTTCAGGCCCAAGCTGACAATGTCGAGGTTATTACATT

Ace file of the UniGene biog3_v1.0_unigene26611 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9614	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	DUF642 domain containing protein	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	73%
Blast2go	uncharacterized protein	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	anchored to membrane	GO:0031225	Cellular Component	79%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	79%
Blast2go	plasma membrane	GO:0005886	Cellular Component	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF642	IPR006946	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVG9

Fln msg: Distance to subject end: 234 aas, your sequence is shorter than subject: 155 - 408

Fln protein: MAKNSQLSLLLFFRFLEALVCLSVLLTFVAAEDGLLVNGNFEKAGIENRTSRAGEMEYVNDGERQGSMYLVVPEGKHAVRLGNDAQISQQISVQKGSTYSLTFSAARTCAQMESLNVSVPPSTRNVDLQTLYNIYGWDTYAWAFQAQADNVEVIT

Protein Length: 156

Fln nts: AATGTCATTTGTGCCAAGACATCAGTTGATCAAACAAATGCCGAATTGTAGGGTTTATTAGACTGTCGACATTAAGTTATTGCCAGAAAAGGAAAATTTAAAG_-_ATGGCTAAAAACTCTCAGCTCTCATTGCTACTGTTTTTTCGTTTTCTTGAAGCATTAGTGTGCTTAAGTGTTCTTTTGACCTTCGTTGCAGCAGAAGATGGTCTGCTGGTGAATGGAAACTTTGAAAAGGCGGGGATCGAGAATAGAACATCACGGGCAGGCGAGATGGAATATGTAAATGACGGGGAGAGGCAGGGCAGCATGTACCTGGTTGTTCCTGAAGGTAAGCATGCCGTGAGGCTGGGCAACGACGCCCAGATCAGCCAACAGATCAGTGTCCAGAAAGGGTCGACATATTCTCTCACATTTAGCGCGGCGCGAACCTGTGCGCAGATGGAATCGCTCAACGTTTCTGTGCCTCCGTCTACTAGGAACGTAGATTTGCAGACTCTGTATAATATTTATGGCTGGGACACCTATGCCTGGGCTTTTCAGGCCCAAGCTGACAATGTCGAGGTTATTACATT

Fln Alignment:

biogeco3_mira_rep_c31880___MAKNSQXXXXXXXXXXXXLVCLSVLLTFVAA------EDGLLVNGNFEKAGIENRTSRAGEM------------EYVNDGERQGSMYLVVPEGKHAVRLGNDAQISQQISVQKGSTYSLTFSAARTCAQMESLNVSVPPSTRNVDLQTLYNIYGWDTYAWAFQAQADNVEVI
A9NVG9__________________MAKKSELPFSSVFRLLQVLICLSILSTFVTAQDGVTAEDGLLVNGNFEKEGIENRTSRAGDIDSLPGWNIDGMVEYINEGQKQGSMYLVVPEGKHAVRLGNEAQISQQINIQKGSTYSLTFSAARTCAQLESLNVSVPPSTRNVDLQTLYSIYGWDTYAWAFQAQSENVEVI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain