SustainPineDB

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Assembly info
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ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene26609

Length: 310 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene26609
AATTTGTTAGTTTAAAACCTGATTCACTCTTTATTCAGACATTGAATTTTTAGTTCGTTGAGCACAACCAGGTTTCGGGAGGCCAAGACAAGGGTTTTTAGAATACCAAGGCAATGGATATCGACTGGATCAATGCCCCTCATTCCCTGGGGACAACAATTATCGGGGTGACCTACAATGGAGGAACGGTTCTGGGAGCTGATTCGCGGACAAGCACGGGAATGTATGTGGCAAATCGAGCTTCGGATAAGATTACTCAACTCACTGATAATGTTTATCTCTGCCGCTCAGGCTCAGCTGCAGATACATT

Ace file of the UniGene biog3_v1.0_unigene26609 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27331	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Proteasome subunit beta type n=2 Tax=Picea sitchensis RepID=A9NLJ2_PICSI	-	-	92%
FL-Next	sp=Proteasome subunit beta type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	proteasome subunit beta type-6	-	-	91%

Source	GOs	Term	Type	Identity
Blast2go	regulation of plant-type hypersensitive response	GO:0010363	Biological Process	91%
Blast2go	response to salt stress	GO:0009651	Biological Process	91%
Blast2go	response to zinc ion	GO:0010043	Biological Process	91%
Blast2go	peptidase activity	GO:0008233	Molecular Function	91%
Blast2go	proteasome complex	GO:0000502	Cellular Component	91%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	91%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase T1A, proteasome beta-subunit	IPR000243	-	-
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	-
Sma3	Proteasome, beta-type subunit, conserved site	IPR016050	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NMI9

Fln msg: Distance to subject end: 167 aas, your sequence is shorter than subject: 65 - 233

Fln protein: MDIDWINAPHSLGTTIIGVTYNGGTVLGADSRTSTGMYVANRASDKITQLTDNVYLCRSGSAADT

Protein Length: 66

Fln nts: AATTTGTTAGTTTAAAACCTGATTCACTCTTTATTCAGACATTGAATTTTTAGTTCGTTGAGCACAACCAGGTTTCGGGAGGCCAAGACAAGGGTTTTTAGAATACCAAGGCA_-_ATGGATATCGACTGGATCAATGCCCCTCATTCCCTGGGGACAACAATTATCGGGGTGACCTACAATGGAGGAACGGTTCTGGGAGCTGATTCGCGGACAAGCACGGGAATGTATGTGGCAAATCGAGCTTCGGATAAGATTACTCAACTCACTGATAATGTTTATCTCTGCCGCTCAGGCTCAGCTGCAGATACATT

Fln Alignment:

biogeco3_mira_rep_c31872___MDIDWINAPHSLGTTIIGVTYNGGTVLGADSRTSTGMYVANRASDKITQLTDNVYLCRSGSAADT
A9NMI9__________________MDMDWINAPHSMGTTIIGVTYNGGTVLGADSRTSTGMYVANRASDKITQLTDNVYLCRSGSAADS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain