SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene26596

Length: 240 nt

UniGene Fasta

>biog3_v1.0_unigene26596
ACGTAGTGGTTGATGTAAAAGTAGGTGATAGAATTGAAACTGTGCGATTCTTCCATGTTTACAAGAGGGGAGTAGATCGTGTTTTTGTGGATCACCCATCCTTCCTCCTATGTCAGGCAGCTATTGAAGCTCCAAGGATTCTTAATCTCTCAAGCAGTGAACACTTTAGTGGACCTTATGGGGAGGATGTTGTCTTCATTGCCAATGATTGGCATACATCTCTTCTTCCTTGTTACTTGA

Ace file of the UniGene biog3_v1.0_unigene26596

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene82635	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Granule bound starch synthase Ia n=1 Tax=Lotus japonicus RepID=B2CP01_LOTJA	-	-	5.99756e-43	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Blast2go	granule-bound starch synthase	-	-	0.0	74%

Source	InterPros	Term	Type	Identity
Sma3	Glycosyl transferase, family 1	IPR001296	-	-
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	Glycogen/starch synthases, ADP-glucose type	IPR011835	-	-
Sma3	Starch synthase, catalytic domain	IPR013534	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LR42

Fln msg: Distance to subject end: 202 aas, your sequence is shorter than subject: 79 - 459

Fln protein: VVVDVKVGDRIETVRFFHVYKRGVDRVFVDHPSFLLCQAAIEAPRILNLSSSEHFSGPYGEDVVFIANDWHTSLLPCYL

Protein Length: 80

Fln nts: ACGTAGTGGTTGATGTAAAAGTAGGTGATAGAATTGAAACTGTGCGATTCTTCCATGTTTACAAGAGGGGAGTAGATCGTGTTTTTGTGGATCACCCATCCTTCCTCCTATGTCAGGCAGCTATTGAAGCTCCAAGGATTCTTAATCTCTCAAGCAGTGAACACTTTAGTGGACCTTATGGGGAGGATGTTGTCTTCATTGCCAATGATTGGCATACATCTCTTCTTCCTTGTTACTTGA

Fln Alignment:

biogeco3_mira_rep_c31817___VVVDVKVGDRIETVRFFHVYKRGVDRVFVDHPSFL-----------------------------LCQAAIEAPRILNLSSSEHFSGPYGEDVVFIANDWHTSLLPCYL
B8LR42__________________VSIDIKVGDKTESVRFFHIYKRGVDRIFVDHPWFLEKVWGKTGGKIYGPETGVDYKDNELRFSLLCQAAIEAPRILNLSSSEHFSGPYGEDVVFIANDWHTALLPCYL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain