SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene26588

Length: 274 nt

UniGene Fasta

>biog3_v1.0_unigene26588
AATGTAACACATTCAGAGCATGCTATCAAATGAAACTGCTGTAATTGCTGAAACCGGTGACTCTTGGTTCAATTGCCAGAAGCTTAAATTGCCCAGGATGTGTCTACCATGATTAGACAAGGGCAGAATACTATCATTTTTCTGATTAATAATGGAGGATACACAATAGAGGTCGAAATTCATGATGGGCCATACAATGTCATTAAGAATTGGAACTACACCGGTTTAGTAGATGCCATTCATAACGGGGAAGGGAAATGCTGGACTGTCAAGG

Ace file of the UniGene biog3_v1.0_unigene26588

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13119	1/2
SustainPine v2.0	sp_v2.0_unigene16734	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	Pyruvate decarboxylase 1 n=1 Tax=Lotus corniculatus RepID=Q84V95_LOTCO	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	pyruvate decarboxylase	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Pyruvate decarboxylase.	EC:4.1.1.1	-	0.0	87%

Source	KEGGs	Term	Identity
Blast2go	Glycolysis / Gluconeogenesis	00010	87%
Blast2go	Metabolic pathways	01100	87%
Blast2go	Biosynthesis of secondary metabolites	01110	87%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	87%
Blast2go	magnesium ion binding	GO:0000287	Molecular Function	87%
Blast2go	transferase activity	GO:0016740	Molecular Function	87%
Blast2go	thiamine pyrophosphate binding	GO:0030976	Molecular Function	87%
Blast2go	pyruvate decarboxylase activity	GO:0004737	Molecular Function	87%
Blast2go	membrane	GO:0016020	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	Pyruvate decarboxylase/indolepyruvate decarboxylase	IPR012110	-	-
Sma3	Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain	IPR012001	-	-
Sma3	Thiamine pyrophosphate enzyme, C-terminal TPP-binding	IPR011766	-	-
Sma3	Thiamine pyrophosphate enzyme, central domain	IPR012000	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PRN0

Fln msg: Warning!, your query overlaps and the subject is separated, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 56 aas, your sequence is shorter than subject: 91 - 409

Fln protein: M*HIQSMLSNETAVIAETGDSWFNCQKLKLxxxxxTMIRQGQNTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTVK

Protein Length: 92

Fln nts: AATGTAACACATTCAGAGCATGCTATCAAATGAAACTGCTGTAATTGCTGAAACCGGTGACTCTTGGTTCAATTGCCAGAAGCTTAAATTGxxxxxxxxxxxxxxxACCATGATTAGACAAGGGCAGAATACTATCATTTTTCTGATTAATAATGGAGGATACACAATAGAGGTCGAAATTCATGATGGGCCATACAATGTCATTAAGAATTGGAACTACACCGGTTTAGTAGATGCCATTCATAACGGGGAAGGGAAATGCTGGACTGTCAAGG

Fln Alignment:

biogeco3_mira_rep_c31777___HIQSMLSNETAVIAETGDSWFNCQKLKLPRMCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQDVSTMIRQGQNTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTVK
C0PRN0__________________HIQGMLTNETAVIAETGDSWFNCQKLKLPEKCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQDVSTMIRNGQNTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDALHNGEGKCWTVK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain