SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene26567

Length: 737 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene26567 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18261	2/12
SustainPine v2.0	sp_v2.0_unigene76819	10/12

Source	Descriptions	Term	Type	Identity
AutoFact	Acetolactate synthase n=1 Tax=Picea sitchensis RepID=B8LK99_PICSI	-	-	88%
FL-Next	sp=Acetolactate synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	acetohydroxyacid synthase 1	-	-	87%

Source	InterPros	Term	Type	Identity
Sma3	TPP-binding enzyme, conserved site	IPR000399	-	-
Sma3	Chalcone/stilbene synthase, N-terminal	IPR001099	-	-
Sma3	Thiamine pyrophosphate enzyme, C-terminal TPP-binding	IPR011766	-	-
Sma3	Thiamine pyrophosphate enzyme, central domain	IPR012000	-	-
Sma3	Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain	IPR012001	-	-
Sma3	Chalcone/stilbene synthase, C-terminal	IPR012328	-	-
Sma3	Acetolactate synthase, large subunit, biosynthetic	IPR012846	-	-
Sma3	Thiolase-like, subgroup	IPR016038	-	-

Full-Lengther Next Prediction

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
309	33		66		0.997452
310	33	66			0.997452
311		66		33	0.997452
312	66		33		0.997452
438	87		12		0.992554
458	85	14			0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain