SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene26549

Length: 196 nt

UniGene Fasta

>biog3_v1.0_unigene26549
AATGTAGTGTTTTGACACAAAAGTTTTCAAGAAACCTCGGGGCCTTGAAGATCCTGAAATAATAGCAAGGGACACAGTTTTTAGTGTGAGTGAGGTAGAAGCTCTGTATGAGCTATTTAAGAAGATTAGCAGTGCTGTGATTGATGATGGTCTTATCAACAAGGAGGAGTTTCAACTAGCCTTATTCAAGACATTC

Ace file of the UniGene biog3_v1.0_unigene26549

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10138	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Calcineurin B-like protein 03 n=12 Tax=Magnoliophyta RepID=A5AHA7_VITVI	-	-	90%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	calcineurin b-like protein 3	-	-	94%

Source	GOs	Term	Type	Identity
Blast2go	detection of calcium ion	GO:0005513	Biological Process	94%
Blast2go	calcium ion binding	GO:0005509	Molecular Function	94%
Blast2go	protein binding	GO:0005515	Molecular Function	94%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	94%

Source	InterPros	Term	Type	Identity
Sma3		IPR015757	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	Recoverin	IPR001125	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQ47

Fln msg: Distance to subject end: 27 aas, atg_distance in limit (1-15): atg_distance = 16, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 63 - 107

Fln protein: CFDTKVFKKPRGLEDPEIIARDTVFSVSEVEALYELFKKISSAVIDDGLINKEEFQLALFKTF

Protein Length: 64

Fln nts: AATGTAGTGTTTTGACACAAAAGTTTTCAAGAAACCTCGGGGCCTTGAAGATCCTGAAATAATAGCAAGGGACACAGTTTTTAGTGTGAGTGAGGTAGAAGCTCTGTATGAGCTATTTAAGAAGATTAGCAGTGCTGTGATTGATGATGGTCTTATCAACAAGGAGGAGTTTCAACTAGCCTTATTCAAGACATTC

Fln Alignment:

biogeco3_mira_rep_c31389___CFDTKVFKKPRGLEDPEIIARDTVFSVSEVEALYELFKKISSAVIDDGLINKEEFQLALFKT
A9NQ47__________________CCDTKVFKKSQGLEDPEIIARDTVFSVSEVEALYELFKKISSAVIDDGLINKEEFQLALFKT

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain