SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene26523

Length: 475 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene26523
AATGTATCATCTCAGATCCGAGGAAAATAATGAGAATGTGAAGATCGTCATGTTGGATGTTGGAAATGGTGTGCATAACGTTGGATAGCACTTGCACCCTCTCACTCATTGACACAACTCGTTGCCTCCAAATTGTGCCTTTTGAAGAAGATGACAAGGATCCAAGCATCTGGTTTTGGATCACAACTATCATGAATCTATGTTTGAAATGTTCAAGCGGATTAATGCAAAGGAGCATGTGGTAGGATGGTATAGCACTGGTCCAAAACTTCGGGAAAATGACTTGGATGTGCATGAGTTGTTCCACGACTATGTGCCCAATCCTGTGCTTGTCATTATTGATGTCCAACCGAAGGAGCTGGGGATTCCTACCAAAGCATACTATGCTGTGGAGGAAGTTAAAGAGAATGCAACTCAGAAAAGCCAGAAGGTATTTGTGCATGTGCCTTCTGAAATTTGTGCTCATGAAGACATT

Ace file of the UniGene biog3_v1.0_unigene26523 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16292	1/3
SustainPine v2.0	sp_v2.0_unigene62945	2/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Probable 26S proteasome non-ATPase regulatory subunit 7 n=15 Tax=Magnoliophyta RepID=PSD7_ARATH	-	-	1.0e-31	93%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Blast2go	26s proteasome regulatory particle non-atpase subunit	-	-	3.98109e-42	94%

Source	GOs	Term	Type	e value	Identity
Blast2go	leaf morphogenesis	GO:0009965	Biological Process	3.98109e-42	94%
Blast2go	proteasome complex	GO:0000502	Cellular Component	3.98109e-42	94%

Source	InterPros	Term	Type	Identity
Sma3	JAB1/Mov34/MPN/PAD-1	IPR000555	-	-
Sma3	Drug/metabolite transporter	IPR000620	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Domain of unknown function DUF250	IPR004853	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	DBP10CT	IPR012541	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-
Sma3		IPR014021	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NKL6

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 134 aas, your sequence is shorter than subject: 158 - 310

Fln protein: MYHLRSEENNENVKIVMLDVGNGVHNVG*HLHPLTH*HNSLPPNCAF*RR*QGSKHLVLDHNYHESMFEMFKRINAKEHVVGWYSTGPKLRENDLDVHELFHDYVPNPVLVIIDVQPKELGIPTKAYYAVEEVKENATQKSQKVFVHVPSEICAHEDI

Protein Length: 159

Fln nts: AATGTATCATCTCAGATCCGAGGAAAATAATGAGAATGTGAAGATCGTCATGTTGGATGTTGGAAATGGTGTGCATAACGTTGGATAGCACTTGCACCCTCTCACTCATTGACACAACTCGTTGCCTCCAAATTGTGCCTTTTGAAGAAGATGACAAGGATCCAAGCATCTGGTTTTGGATCACAACTATCATGAATCTATGTTTGAAATGTTCAAGCGGATTAATGCAAAGGAGCATGTGGTAGGATGGTATAGCACTGGTCCAAAACTTCGGGAAAATGACTTGGATGTGCATGAGTTGTTCCACGACTATGTGCCCAATCCTGTGCTTGTCATTATTGATGTCCAACCGAAGGAGCTGGGGATTCCTACCAAAGCATACTATGCTGTGGAGGAAGTTAAAGAGAATGCAACTCAGAAAAGCCAGAAGGTATTTGTGCATGTGCCTTCTGAAATTTGTGCTCATGAAGACATT

Fln Alignment:

biogeco3_mira_rep_c31240___LDHNYHESMFEMFKRINAKEHVVGWYSTGPKLRENDLDVHELFHDYVPNPVLVIIDVQPKELGIPTKAYYAVEEVKENATQKSQKVFVHVPSEICAHE
A9NKL6__________________LDHNYHESMFEMFKRINAKEHVVGWYSTGPKLRENDLDVHELFHDYVPNPVLVIIDVQPKELGIPTKAYYAVEEVKENATQKSQKVFVHVPSEICAHE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain