SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene26514

Length: 225 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene26514
CAAAGGGATTGTTAGCTATATACAATTCTCTGAACGAAAAAGGAAGGAGGGATTTTGAGATGGCATACAGCGCTTCATATTACCCCTGCATGGAAATTTGTACGTAGTGCTATGAGGATGTAGCTTCTGGCAATGAGATCCGGAGTGTTGTCATGGCAGGGCGTCGGTTTCTGGAAAAGGATGGGCTCCCAGCATTTCCCATGGGTAAGATTGATGAAACACATT

Ace file of the UniGene biog3_v1.0_unigene26514 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16325	3/4

Source	Descriptions	Term	Type	Identity
AutoFact	Ketol-acid reductoisomerase, chloroplastic n=7 Tax=Poaceae RepID=ILV5_ORYSJ	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	ketol-acid reductoisomerase	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	92%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	92%
Blast2go	copper ion binding	GO:0005507	Molecular Function	92%
Blast2go	magnesium ion binding	GO:0000287	Molecular Function	92%
Blast2go	NADPH binding	GO:0070402	Molecular Function	92%
Blast2go	protein homodimerization activity	GO:0042803	Molecular Function	92%
Blast2go	catalytic activity	GO:0003824	Molecular Function	92%
Blast2go	cell wall	GO:0005618	Cellular Component	92%
Blast2go	mitochondrion	GO:0005739	Cellular Component	92%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	92%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	92%
Blast2go	apoplast	GO:0048046	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Sma3	Acetohydroxy acid isomeroreductase C-terminal	IPR000506	-	-
Sma3	Ketose-bisphosphate aldolase, class-II	IPR000771	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Mpv17/PMP22	IPR007248	-	-
Sma3	LURP1-like domain	IPR007612	-	-
Sma3	Acetohydroxy acid isomeroreductase	IPR013023	-	-
Sma3	Acetohydroxy acid isomeroreductase, catalytic	IPR013116	-	-
Sma3	Dehydrogenase, multihelical	IPR013328	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Ketol-acid reductoisomerase	IPR016206	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LR30

Fln msg: Distance to subject end: 30 aas, your sequence is shorter than subject: 74 - 467

Fln protein: KGLLAIYNSLNEKGRRDFEMAYSASYYPCMEICT*CYEDVASGNEIRSVVMAGRRFLEKDGLPAFPMGKIDETH

Protein Length: 75

Fln nts: CAAAGGGATTGTTAGCTATATACAATTCTCTGAACGAAAAAGGAAGGAGGGATTTTGAGATGGCATACAGCGCTTCATATTACCCCTGCATGGAAATTTGTACGTAGTGCTATGAGGATGTAGCTTCTGGCAATGAGATCCGGAGTGTTGTCATGGCAGGGCGTCGGTTTCTGGAAAAGGATGGGCTCCCAGCATTTCCCATGGGTAAGATTGATGAAACACATT

Fln Alignment:

biogeco3_mira_rep_c31201___KGLLAIYNSLNEKGRRDFEMAYSASYYPCMEICT*CYEDVASGNEIRSVVMAGRRFLEKDGLPAFPMGKI
B8LR30__________________KGMLSIYNSLNEEEKGDFEMAYSASYYPCMEILYECYEDVASGNEIRSVVLAGRRFVEKDGLPAFPMVRL

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
122	50	25			0.995533
124	25		75		0.996473
126	66			33	0.997457

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain