SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene26401

Length: 360 nt

UniGene Fasta

>biog3_v1.0_unigene26401
AATGTAAAGCAAAACATTGCCACGGGGTTGGGTGCATGGCAAGCAACTTGTGATTGGTGTGCCTAGAAAGACAGGCTTCAAAGAATTTGTAGCAGCAAATGGTAGTGGCATTGTGACAGGATTTTGTGTTGATGTGTTTATTGCAGCAGTGAAATTGCTTCCTTACAAGATTCAGTACACATTTAAACCTTATGGAAATGGAAATTCTACACCCAATTATGATGATCTCGTAAAGCAGGTCGCTTTACAGGTTGGTATGTGTTAAATTTTAATGACTCCTTAATTGGTTGGTAACCTAATTGAAAAAGTGTTTCCCTGGTGGTTACCTCACAGCTAGTCTTACACGCTCTTGGATAATTT

Ace file of the UniGene biog3_v1.0_unigene26401

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6452	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glutamate receptor n=1 Tax=Ricinus communis RepID=B9R8R0_RICCO	-	-	3.0e-35	44%
FL-Next	sp=Glutamate receptor 3.6; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	45%
Blast2go	glutamate-gated kainate-type ion channel receptor subunit 5	-	-	2.31242e-41	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	transmembrane signaling receptor activity	GO:0004888	Molecular Function	2.31242e-41	63%
Blast2go	transporter activity	GO:0005215	Molecular Function	2.31242e-41	63%
Blast2go	cell part	GO:0044464	Cellular Component	2.31242e-41	63%

Source	InterPros	Term	Type	Identity
Sma3	GPCR, family 3	IPR000337	-	-
Sma3	Ionotropic glutamate receptor	IPR001320	-	-
Sma3	Extracellular ligand-binding receptor	IPR001828	-	-
Sma3	GPCR, family 3, gamma-aminobutyric acid receptor, type B	IPR002455	-	-
Sma3		IPR015683	-	-
Sma3	Ionotropic glutamate receptor, plant	IPR017103	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q84W41

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 341 aas, your sequence is shorter than subject: 88 - 903

Fln protein: M*SKTLPRGWVHGKQLVIGVPRKTGFKEFVAANGSGIVTGFCVDVFIAAVKLLPYKIQYTFKPYGNGNSTPNYDDLVKQVALQVGMC*

Protein Length: 89

Fln nts: AATGTAAAGCAAAACATTGCCACGGGGTTGGGTGCATGGCAAGCAACTTGTGATTGGTGTGCCTAGAAAGACAGGCTTCAAAGAATTTGTAGCAGCAAATGGTAGTGGCATTGTGACAGGATTTTGTGTTGATGTGTTTATTGCAGCAGTGAAATTGCTTCCTTACAAGATTCAGTACACATTTAAACCTTATGGAAATGGAAATTCTACACCCAATTATGATGATCTCGTAAAGCAGGTCGCTTTACAGGTTGGTATGTGTTAAATTTTAATGACTCCTTAATTGGTTGGTAACCTAATTGAAAAAGTGTTTCCCTGGTGGTTACCTCACAGCTAGTCTTACACGCTCTTGGATAATTT

Fln Alignment:

biogeco3_mira_rep_c30500___LPRGWV---HGKQLVIGVPRKTGFKEFVAANGSGIVTGFCVDVFIAAVKLLPYKIQYTFKPYGNGNSTPNYDDLVKQVALQV
Q84W41__________________IPRGWVFSNNGRHLRIGVPNRYRFEEVVSVKSNGMITGFCVDVFIAAINLLPYAVPFELVAFGNGHDNPSNSELVRLITTGV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain