SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene26393

Length: 198 nt

UniGene Fasta

>biog3_v1.0_unigene26393
GCAATCCATTTTGCTACCTACTGTCATGGAGTTTGACAACACTGAGAAGGGTGATGCCCTTTATGCCATGGAGTTGGCCTTGTCTCTGGAGAAACTTACGAATCAAAACTTCTGAACTTGCACGTTGTAGCCCAAGAGGCCAACGATGGTCAGATGACGGATTTCATCGAGGTTGAATTTCTCTCCAACAGGTTGAAA

Ace file of the UniGene biog3_v1.0_unigene26393

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene81316	1/2
SustainPine v2.0	sp_v2.0_unigene81654	1/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ferritin (Fragment) n=3 Tax=Pseudotsuga RepID=C6F952_PSEMZ	-	-	3.0e-36	86%
FL-Next	sp=Ferritin; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Blast2go	ferritin	-	-	0.0	86%

Source	InterPros	Term	Type	Identity
Sma3	G-patch domain	IPR000467	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Ferritin	IPR001519	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Ferritin/DPS protein domain	IPR008331	-	-
Sma3	Ferritin- like diiron domain	IPR009040	-	-
Sma3	Ferritin-related	IPR012347	-	-
Sma3	Ferritin, conserved site	IPR014034	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PRI0

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 106 and 106, Distance to subject end: 51 aas, your sequence is shorter than subject: 66 - 289

Fln protein: QSILLPTVMEFDNTEKGDALYAMELALSLEKLTNxxLLNLHVVAQEANDGQMTDFIEVEFLSNRLK

Protein Length: 67

Fln nts: GCAATCCATTTTGCTACCTACTGTCATGGAGTTTGACAACACTGAGAAGGGTGATGCCCTTTATGCCATGGAGTTGGCCTTGTCTCTGGAGAAACTTACGAATxxxxxxCTTCTGAACTTGCACGTTGTAGCCCAAGAGGCCAACGATGGTCAGATGACGGATTTCATCGAGGTTGAATTTCTCTCCAACAGGTTGAAA

Fln Alignment:

biogeco3_mira_rep_c30487___QSILLPTVMEFDNTEKGDALYAMELALSLEKLTNQKLLNLHVVAQEANDGQMTDFIEVEFLSNRLK
C0PRI0__________________QSILMPTIMEFDNSQKGEALYAMELALSLEKLTNQKLLNLHTVAQEANDGQMTDFIEGNFLTDQVQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain