SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene26381

Length: 234 nt

UniGene Fasta

>biog3_v1.0_unigene26381
AATGTATTATTTGAAATGGTCAGTATTCCTGCCTGGTTCACAATGGATACCAGACTTGGAAGCATGTCTGTGCATTTAGATACACCCCAATGCTTTACTGCTGAAATGTATGCAGTTGACTTAAATGTTCCAGATGCACCAGAGGAACAGAAGATAAATCTTGCACAGGAGACTCTCCGTGGACTTTTGGCACATTGGTTGTCGAGGAGACGACAACGGTTGGCAACTCAAGCT

Ace file of the UniGene biog3_v1.0_unigene26381

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13875	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] ref\|NP_850516.1\| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gb\|AAL07141.1\| unknown protein [Arabidopsis thaliana] gb\|AAM83246.1\| AT3g05090/T12H1_5 [Arabidopsis thalia	-	-	65%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	76%
Blast2go	wd repeat-containing protein 48-like	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	[Myosin heavy-chain] kinase.	EC:2.7.11.7	-	0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	lateral root formation	GO:0010311	Biological Process	81%
Blast2go	myosin heavy chain kinase activity	GO:0016905	Molecular Function	81%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	81%
Blast2go	CUL4 RING ubiquitin ligase complex	GO:0080008	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Heat shock protein Hsp20	IPR002068	-	-
Sma3	2-oxo acid dehydrogenase, lipoyl-binding site	IPR003016	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9MZJ8

Fln msg: Distance to subject end: 220 aas, your sequence is shorter than subject: 78 - 761

Fln protein: NVLFEMVSIPAWFTMDTRLGSMSVHLDTPQCFTAEMYAVDLNVPDAPEEQKINLAQETLRGLLAHWLSRRRQRLATQA

Protein Length: 79

Fln nts: AATGTATTATTTGAAATGGTCAGTATTCCTGCCTGGTTCACAATGGATACCAGACTTGGAAGCATGTCTGTGCATTTAGATACACCCCAATGCTTTACTGCTGAAATGTATGCAGTTGACTTAAATGTTCCAGATGCACCAGAGGAACAGAAGATAAATCTTGCACAGGAGACTCTCCGTGGACTTTTGGCACATTGGTTGTCGAGGAGACGACAACGGTTGGCAACTCAAGCT

Fln Alignment:

biogeco3_mira_rep_c30460___LFEMVSIPAWFTMDTRLGSMSVHLDTPQCFTAEMYAVDLNVPDAPEEQKINLAQETLRGLLAHWLSRRRQRLATQA
B9MZJ8__________________LFEMVSIPAWFTVDTRLGSLSVHLDTPQCFSAEMYSADLNIVGKPEDDKVNLARETLKGLLAHWLAKRRQRLGSQA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain