SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene26374

Length: 248 nt

UniGene Fasta

>biog3_v1.0_unigene26374
CAGCCTGTTATTAACAGGCTGCATCCAGGAGAGGAATACTATGCGAAATGTCAGGCAGATTATATGATAATGCAGGCTGATGCTGACAAAGATGGGCGTCTGAGTTTGAAAGAGATGCTAGACCACCCGTATGTTTCTATAGTGCCATATTCACTGATGAAGATGATGAAGATGATTACCATGACGAATTCCGTTAAAATCTTTGGACTAATTGGGAAGTTTCAAGGTCTGCTGAAGTTTTGTACATT

Ace file of the UniGene biog3_v1.0_unigene26374

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene774	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	72%
Blast2go	protein	-	-	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	calcium ion binding	GO:0005509	Molecular Function	0.0	67%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	67%

Source	InterPros	Term	Type	Identity
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: A5AGW1

Fln msg: STOP codon was not found. Distance to subject end: 18 aas, your sequence is shorter than subject: 82 - 179

Fln protein: QPVINRLHPGEEYYAKCQADYMIMQADADKDGRLSLKEMLDHPYVSIVPYSLMKMMKMITMTNSVKIFGLIGKFQGLLKFCT

Protein Length: 83

Fln nts: CAGCCTGTTATTAACAGGCTGCATCCAGGAGAGGAATACTATGCGAAATGTCAGGCAGATTATATGATAATGCAGGCTGATGCTGACAAAGATGGGCGTCTGAGTTTGAAAGAGATGCTAGACCACCCGTATGTTTCTATAGTGCCATATTCACTGATGAAGATGATGAAGATGATTACCATGACGAATTCCGTTAAAATCTTTGGACTAATTGGGAAGTTTCAAGGTCTGCTGAAGTTTTGTACATT

Fln Alignment:

biogeco3_mira_rep_c30446___PVINRLHPGEEYYAKCQADYMIMQADADKDGRLSLKEMLDHPYV
A5AGW1__________________PIIGKLHPSEHYYAKQQADYIISQADADKDGRLTLTEMIDNPYV

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain