SustainPineDB

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Assembly info
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ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene26354

Length: 263 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene26354
CAAACGGGATTTGATTCAAACGTCTTTGCAGGGAGTGCCCTTCTTGACATGTATGCCAAATGTGGGAGCATAGATGACGCACGCCGTGCTTTTGACAGCATCCGTGATAGAAATGCAGTTTCATGGACTTCAATGATCATTGGATATGCTCAGAATGGATGTGGGGAGGAAGCTCTCCAAATATATAAACAAATGCTGCTCGTTGGTATGAAGCCTGACAACATCACCTTTGTTGGCGTTTTAACTGCATGTAACCATACATT

Ace file of the UniGene biog3_v1.0_unigene26354 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene67855	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative pentatricopeptide (PPR) repeat-containing protein [Oryza sativa Japonica Group] gb\|EEC72563.1\| hypothetical protein OsI_05996 [Oryza sativa Indica Group]	-	-	2.0e-25	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Blast2go	pentatricopeptide repeat-containing protein	-	-	5.86439e-31	77%

Source	InterPros	Term	Type	Identity
Sma3	PAK-box/P21-Rho-binding	IPR000095	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Plant lipid transfer protein/Par allergen	IPR000528	-	-
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Kinesin, motor domain	IPR001752	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3		IPR003612	-	-
Sma3	Aspartate/ornithine carbamoyltransferase	IPR006130	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Plant lipid transfer protein/hydrophobic protein helical domain	IPR013770	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3		IPR017442	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	PDZ-binding protein, CRIPT	IPR019367	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLJ0

Fln msg: Distance to subject end: 120 aas, your sequence is shorter than subject: 87 - 644

Fln protein: QTGFDSNVFAGSALLDMYAKCGSIDDARRAFDSIRDRNAVSWTSMIIGYAQNGCGEEALQIYKQMLLVGMKPDNITFVGVLTACNHT

Protein Length: 88

Fln nts: CAAACGGGATTTGATTCAAACGTCTTTGCAGGGAGTGCCCTTCTTGACATGTATGCCAAATGTGGGAGCATAGATGACGCACGCCGTGCTTTTGACAGCATCCGTGATAGAAATGCAGTTTCATGGACTTCAATGATCATTGGATATGCTCAGAATGGATGTGGGGAGGAAGCTCTCCAAATATATAAACAAATGCTGCTCGTTGGTATGAAGCCTGACAACATCACCTTTGTTGGCGTTTTAACTGCATGTAACCATACATT

Fln Alignment:

biogeco3_mira_rep_c30411___QTGFDSNVFAGSALLDMYAKCGSIDDARRAFDSIRDRNAVSWTSMIIGYAQNGCGEEALQIYKQMLLVGMKPDNITFVGVLTACNH
B8LLJ0__________________RSGFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSASLSAMIVGYAINGCSKESLELFEQMQFTGLKPDRVTFVGVLSACCH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain