SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene26341

Length: 222 nt

UniGene Fasta

>biog3_v1.0_unigene26341
AATGTTGAAGTTTGATTTAGATGGTCTTGTTGTCATTGGTGGAGATGATCAAATACAAATGCCTGCCTTCTTGCAGAAAATTCAGAGAGAAAAGTTAAAACACAGGTGATTGGCTGTCCAAAACAATTGATGGTGATCTTAAGTCCAAGGAAGTTCCAACAAGTTTTGGGTTTGACACAGCTTATTTATGCAGAGATGATAGGGAATGTGATGGTTGATGCG

Ace file of the UniGene biog3_v1.0_unigene26341

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15415	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	pyrophosphate-dependent phosphofructokinase beta subunit [Citrus x paradisi]	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	57%
Blast2go	pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta-like	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:2.7.1.9-	-	0.0	87%

Source	GOs	Term	Type	Identity
Blast2go	photosynthesis	GO:0015979	Biological Process	87%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	87%
Blast2go	diphosphate-fructose-6-phosphate 1-phosphotransferase activity	GO:0047334	Molecular Function	87%
Blast2go	cell wall	GO:0005618	Cellular Component	87%
Blast2go	membrane	GO:0016020	Cellular Component	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	Pyrophosphate-dependent phosphofructokinase PfpB	IPR011183	-	0.0	-
Sma3	Phosphofructokinase domain	IPR000023	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P0C2

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 59 aas, your sequence is shorter than subject: 74 - 317

Fln protein: NVEV*FRWSCCHWWR*SNTNACLLAENSERKVKTQVIGCPKQLMVILSPRKFQQVLGLTQLIYAEMIGNVMVDA

Protein Length: 75

Fln nts: AATGTTGAAGTTTGATTTAGATGGTCTTGTTGTCATTGGTGGAGATGATCAAATACAAATGCCTGCCTTCTTGCAGAAAATTCAGAGAGAAAAGTTAAAACACAGGTGATTGGCTGTCCAAAACAATTGATGGTGATCTTAAGTCCAAGGAAGTTCCAACAAGTTTTGGGTTTGACACAGCTTATTTATGCAGAGATGATAGGGAATGTGATGGTTGATGCG

Fln Alignment:

biogeco3_mira_rep_c30385___SNTNACLLAEN-SERKVKTQVIGCPKQLMVILSPRKFQQVLGLTQL--IYAEMIGNVMVDA
A9P0C2__________________SNTNACLLAEKFREKNLKTQVIGCPKTIDGDLKSKEVPTSFGFDTACKIYAEMIGNVMVDA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain