SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene26300

Length: 291 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene26300
TTTGGAGTAGAGTGCTCAAGTGTCCAAACCAGTGAAATAGAGTATCCAAGTGTTGAAAACACAGAAATCTCTAAATGACTCATACACTTACGTACAATTCTGTCCCCATTACTTACAGTCTTTCTCCTAGCCATCTATGTAAAAATGCATTTATTACACCCAAAGTTCTATCTTCTTGCGAGAACTCATCTCAAATGCCTCTGATGCTTTGGATAAAATCAGATTTATGGCTCTCACAGACAAGAATGTGCTGGGAGAAGGTGACAATACCAGGCTCGACATCAAGACATT

Ace file of the UniGene biog3_v1.0_unigene26300 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14550	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Endoplasmin homolog; AltName: Full=Glucose-regulated protein 94 homolog; Short=GRP-94 homolog; Flags: Precursor gb\|AAA16785.1\| heat shock protein 90 [Catharanthus roseus]	-	-	77%
FL-Next	tr=GRP94; Pinus taeda (Loblolly pine).	-	-	90%
Blast2go	heat shock protein 90	-	-	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytoplasm	GO:0005737	Cellular Component	0.0	89%

Source	InterPros	Term	Type	Identity
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	Molecular chaperone, heat shock protein, endoplasmin	IPR015566	-	-
Sma3	Heat shock protein Hsp90	IPR001404	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A7YAU9

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 689 aas, your sequence is shorter than subject: 96 - 834

Fln protein: LE*SAQVSKPVK*SIQVLKTQKSLNDSYTYVQFCPHYLQSFS*PSM*KCIYYTQSSIFLRELISNASDALDKIRFMALTDKNVLGEGDNTRLDIKT

Protein Length: 97

Fln nts: TTTGGAGTAGAGTGCTCAAGTGTCCAAACCAGTGAAATAGAGTATCCAAGTGTTGAAAACACAGAAATCTCTAAATGACTCATACACTTACGTACAATTCTGTCCCCATTACTTACAGTCTTTCTCCTAGCCATCTATGTAAAAATGCATTTATTACACCCAAAGTTCTATCTTCTTGCGAGAACTCATCTCAAATGCCTCTGATGCTTTGGATAAAATCAGATTTATGGCTCTCACAGACAAGAATGTGCTGGGAGAAGGTGACAATACCAGGCTCGACATCAAGACATT

Fln Alignment:

biogeco3_mira_rep_c30304___YTQSSIFLRELISNASDALDKIRFMALTDKNVLGEGDNTRLDIK
A7YAU9__________________YSNKDIFLRELISNASDALDKIRFMALTDKNVLGEGDNTRLDIK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain