SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene26287

Length: 452 nt

UniGene Fasta

>biog3_v1.0_unigene26287
AATGTCCAATAGGAAGCGTAGAAGAGCAAAACAACCGGATACAAATACCACTAAGGATTCTTCAAATGAAGAGAAAGAGCATGTTAGAAAGGAAGCAGATGAGAAAGTAGCAGAGCATTCACAAAGTAGCATAAAGGATAAGAAACATATTGTCAGACTGCCAGCTAATGCAGTTGAGAAGCTTCGCAAAGTCTTTGCTGAAAATGAGCTACCGTCAAGGTCTTACAAGGAAAATCTGTCACAGCAACTGGGCCTTACATTTCGAAAGGTCCATATGTGGTTCAAAAATGCCCGTTATATGTCTCTGAAGAGCCGAAAGGAAATGCCTAGAAATGAGAACTGCAATGAAACTAATCTCATGGGAGAAGGTGATATGGGGCCAAAGAAAAAAATACCAAAAGAGAAGAAAGCTGAATCAACATGTCTTTTTATCTTCTGTTAGAGCAGAATAT

Ace file of the UniGene biog3_v1.0_unigene26287

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4477	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pathogenesis-related homeodomain protein [Arabidopsis thaliana] sp\|P48785.1\|PRH_ARATH RecName: Full=Pathogenesis-related homeodomain protein; Short=PRHA gb\|AAA32843.1\| homeodomain protein [Arabidopsis thaliana] gb\|AAC49836.1\| PRHA [Arabidopsis thaliana] e	-	-	1.0e-11	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	35%
Blast2go	pathogenesis-related homeodomain protein	-	-	7.47012e-18	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	7.47012e-18	63%
Blast2go	positive regulation of transcription, DNA-dependent	GO:0045893	Biological Process	7.47012e-18	63%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	7.47012e-18	63%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	7.47012e-18	63%
Blast2go	protein binding	GO:0005515	Molecular Function	7.47012e-18	63%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	7.47012e-18	63%
Blast2go	nucleus	GO:0005634	Cellular Component	7.47012e-18	63%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABF4

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 251 aas, No stop codon before M and low homology subject, your sequence is shorter than subject: 147 - 371

Fln protein: MSNRKRRRAKQPDTNTTKDSSNEEKEHVRKEADEKVAEHSQSSIKDKKHIVRLPANAVEKLRKVFAENELPSRSYKENLSQQLGLTFRKVHMWFKNARYMSLKSRKEMPRNENCNETNLMGEGDMGPKKKIPKEKKAESTCLFIFC*

Protein Length: 148

Fln nts: A_-_ATGTCCAATAGGAAGCGTAGAAGAGCAAAACAACCGGATACAAATACCACTAAGGATTCTTCAAATGAAGAGAAAGAGCATGTTAGAAAGGAAGCAGATGAGAAAGTAGCAGAGCATTCACAAAGTAGCATAAAGGATAAGAAACATATTGTCAGACTGCCAGCTAATGCAGTTGAGAAGCTTCGCAAAGTCTTTGCTGAAAATGAGCTACCGTCAAGGTCTTACAAGGAAAATCTGTCACAGCAACTGGGCCTTACATTTCGAAAGGTCCATATGTGGTTCAAAAATGCCCGTTATATGTCTCTGAAGAGCCGAAAGGAAATGCCTAGAAATGAGAACTGCAATGAAACTAATCTCATGGGAGAAGGTGATATGGGGCCAAAGAAAAAAATACCAAAAGAGAAGAAAGCTGAATCAACATGTCTTTTTATCTTCTGTTAGAGCAGAATAT

Fln Alignment:

biogeco3_mira_rep_c30270___DKKHIVRLPANAVEKLRKVFAENELPSRSYKENLSQQLGLTFRKVHMWFKNARYMSLKSRKEMP
D5ABF4__________________EQKRRLKTPSQ-VEALENIYAEHKYPTESMKGKLSRELGLSEKQVQRWFRHRRLKDKKGKKEDP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain