SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene26262

Length: 527 nt

UniGene Fasta

>biog3_v1.0_unigene26262
AATGTGAATCAGAACCTGTTGCTGGCCAAGGACAATAGTACCCAACAATTTAAGGACATGGAGGACCCCAACGTTCCCCTTTCTTCATTGGGTATAGGGCACGGCCACATAGTTTTCCTCTCATACGAAGGCGAGAGGTCAGTATCCGGACCCCGGGTAAACATAAATCCTGCTGGGAGCTATGGCAAAAAGATGACCATGGATGATCTGATTGCTAGACAGGTGAGAATTGAGCTCCATGCTGAGAGTGACTTGAAGGAATTTGTTACTGCTTTGGTGAAGTTGGAGGTGAACGAGGAAGGTGGCGCTGATGTCCATTTCGAGGCCTTTCAGTTGAGTGATCAGTGTGTTAAGCTTTTTAAAGAAGGGTGGTTCGTTGACGATTATACTGGTTTGGATCTGAAAATTACAAGGTTGAAGAAGGATGTGGTGATCCTGGGGAAGGATACCAAGGATGTTGACAAGACAAAAAATTTGTCCTTTGTGAAAACGCATATCTGATTTTCACTTATTGCTTCTTCTACATT

Ace file of the UniGene biog3_v1.0_unigene26262

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene24797	1/2
SustainPine v2.0	sp_v2.0_unigene59695	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	nuclear protein localization protein 4-like protein [Arabidopsis thaliana] sp\|Q9LYC2.1\|NPL41_ARATH RecName: Full=NPL4-like protein 1 emb\|CAB87745.1\| putative protein [Arabidopsis thaliana] gb\|AAK59569.1\| unknown protein [Arabidopsis thaliana] gb\|AAL07248.	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	npl4-like protein 2	-	-	80%

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin	IPR000626	-	-
Sma3	Nuclear pore localisation protein NPL4	IPR007717	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	STAG	IPR013721	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A9C1

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 78 aas, your sequence is shorter than subject: 167 - 413

Fln protein: NVNQNLLLAKDNSTQQFKDMEDPNVPLSSLGIGHGHIVFLSYEGERSVSGPRVNINPAGSYGKKMTMDDLIARQVRIELHAESDLKEFVTALVKLEVNEEGGADVHFEAFQLSDQCVKLFKEGWFVDDYTGLDLKITRLKKDVVILGKDTKDVDKTKNLSFVKTHI*

Protein Length: 168

Fln nts: AATGTGAATCAGAACCTGTTGCTGGCCAAGGACAATAGTACCCAACAATTTAAGGACATGGAGGACCCCAACGTTCCCCTTTCTTCATTGGGTATAGGGCACGGCCACATAGTTTTCCTCTCATACGAAGGCGAGAGGTCAGTATCCGGACCCCGGGTAAACATAAATCCTGCTGGGAGCTATGGCAAAAAGATGACCATGGATGATCTGATTGCTAGACAGGTGAGAATTGAGCTCCATGCTGAGAGTGACTTGAAGGAATTTGTTACTGCTTTGGTGAAGTTGGAGGTGAACGAGGAAGGTGGCGCTGATGTCCATTTCGAGGCCTTTCAGTTGAGTGATCAGTGTGTTAAGCTTTTTAAAGAAGGGTGGTTCGTTGACGATTATACTGGTTTGGATCTGAAAATTACAAGGTTGAAGAAGGATGTGGTGATCCTGGGGAAGGATACCAAGGATGTTGACAAGACAAAAAATTTGTCCTTTGTGAAAACGCATATCTGATTTTCACTTATTGCTTCTTCTACATT

Fln Alignment:

biogeco3_mira_rep_c30232___NVNQNLLLAKDNSTQQFKDMEDPNVPLSSLGIGHGHIVFLSYEGERSVSGPRVNINPAGSYGKKMTMDDLIARQVRIE
D5A9C1__________________STNQNLLLAKGNNTQQFKDMEDPNIPLSSLGIGHGHIVFLSYEGERSIAGPQINVNPSGSFGKKMTMDDLISRQVRIE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain