SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene26252

Length: 301 nt

UniGene Fasta

>biog3_v1.0_unigene26252
CCTGTGCACTTATATTTGTATTCAGTACTATTTCTAGGGCATTGACGTTTTTTTTATCATTTGGCCTCAGGTCCAGTAGCAGATGATATGTTTCATTGGCAGGCAACTATCATGGGACCTTCTGACAGTCCCTATGCAGGGGGTGTATTTCTTGTGACTATTCATTTTCCTCCTGATTATCCATTCAAGCCCCCGAAGGTATAGTGTTGATCGCTGAAGTCTAATATAGTGGTGATGTCTGCTTCCATATATCTGAAAAATGAGATACCGTAGTATGTTCAGAGAATCCATGCAAAAGTTC

Ace file of the UniGene biog3_v1.0_unigene26252

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene81688	1/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ubiquitin carrier protein n=1 Tax=Populus trichocarpa RepID=B9HDK6_POPTR	-	-	2.0e-33	90%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Blast2go	ubiquitin-conjugating enzyme	-	-	2.49431e-43	99%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	2.49431e-43	99%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein ubiquitination	GO:0016567	Biological Process	2.49431e-43	99%
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	2.49431e-43	99%
Blast2go	ubiquitin protein ligase binding	GO:0031625	Molecular Function	2.49431e-43	99%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	2.49431e-43	99%
Blast2go	plasma membrane	GO:0005886	Cellular Component	2.49431e-43	99%

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin-conjugating enzyme, E2	IPR000608	-	-
Sma3	Thioredoxin domain	IPR013766	-	-
Sma3	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	-
Sma3		IPR017936	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMC9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 48 aas, atg_distance in limit (1-15): atg_distance = 1, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 39 - 148

Fln protein: MFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKV*

Protein Length: 40

Fln nts: CCTGTGCACTTATATTTGTATTCAGTACTATTTCTAGGGCATTGACGTTTTTTTTATCATTTGGCCTCAGGTCCAGTAGCAGATGAT_-_ATGTTTCATTGGCAGGCAACTATCATGGGACCTTCTGACAGTCCCTATGCAGGGGGTGTATTTCTTGTGACTATTCATTTTCCTCCTGATTATCCATTCAAGCCCCCGAAGGTATAGTGTTGATCGCTGAAGTCTAATATAGTGGTGATGTCTGCTTCCATATATCTGAAAAATGAGATACCGTAGTATGTTCAGAGAATCCATGCAAAAGTTC

Fln Alignment:

biogeco3_mira_rep_c30208___ASGPVADDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKV
B8LMC9__________________SAGPVADDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain