SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene26240

Length: 333 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene26240
AGTCATCTTCTCATGTGCCTGTGAAGTGTGCAGATGCCAAGTGCAGAGATCTGTGCGAGAATGAGGGCTGCATCGAAAGCTTCCAGAAGTGCTCGAAGATTTGTCCACATTTTGGCCTGACCTATGGCACGGGAAACGCGACGGGGCGTCTACTGAGTGACACCTTGATTTTGCCACTGGAAGACGGAGGAAGACGAGAAATAAAGAACTTTGCAATTGGATGTTCAGTGGTTTCGTCCCAGGTTGCTGGTATTGCAGGATTTGGCAATGGAGGACAGTCTATGCCTTCTCAGCTTGCTCCACTTATTGGTGATAAATTTGCGTATTGACATT

Ace file of the UniGene biog3_v1.0_unigene26240 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene79414	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Aspartic proteinase nepenthesin-2, putative n=1 Tax=Ricinus communis RepID=B9SD00_RICCO	-	-	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	52%
Blast2go	aspartic proteinase nepenthesin-2-like	-	-	53%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell wall	GO:0005618	Cellular Component	0.0	53%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AC09

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 216 aas, your sequence is shorter than subject: 109 - 370

Fln protein: SSSHVPVKCADAKCRDLCENEGCIESFQKCSKICPHFGLTYGTGNATGRLLSDTLILPLEDGGRREIKNFAIGCSVVSSQVAGIAGFGNGGQSMPSQLAPLIGDKFAY*

Protein Length: 110

Fln nts: AGTCATCTTCTCATGTGCCTGTGAAGTGTGCAGATGCCAAGTGCAGAGATCTGTGCGAGAATGAGGGCTGCATCGAAAGCTTCCAGAAGTGCTCGAAGATTTGTCCACATTTTGGCCTGACCTATGGCACGGGAAACGCGACGGGGCGTCTACTGAGTGACACCTTGATTTTGCCACTGGAAGACGGAGGAAGACGAGAAATAAAGAACTTTGCAATTGGATGTTCAGTGGTTTCGTCCCAGGTTGCTGGTATTGCAGGATTTGGCAATGGAGGACAGTCTATGCCTTCTCAGCTTGCTCCACTTATTGGTGATAAATTTGCGTATTGACATT

Fln Alignment:

biogeco3_mira_rep_c30188___SSSHVPVKCADAKCRDLCEN------EGCIESFQKCSKICPHFGLTYGTGNATGRLLSDTLILPLEDG-GRREIKNFAIGCSVVSS-QVAGIAGFGNGGQSMPSQLAPLIG-DKFAY
D5AC09__________________SSLHL-VTCADSNCKTLYGNNTELLCQSCAGSLKNCSETCPPYGIQYGRGSTAGLLLTETLNLPLENGEGARAITHFAVGCSIVSSQQPSGIAGFGRGALSMPSQLGEHIGKDRFAY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain