SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene26221

Length: 289 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene26221
CTGTCTAGAAAAGTCTTTGCATTTCCTTAGTTTCTTCGAATTTCTTCAGTTTGCAGAAGATGTCTGAGGAAAAACATCACCATCACCTGTTCCATCACAAGAAGGATGACGAAAACCAAAACGCCCCCTCGGGGGTCGTTTATGCTGAGACCACCACAACATATGGTGATGACCAAGTGATTGAGAGCACAGATGTGTATGGTGCTGGCAAAGTTGAGGACTACGAGAAGGCGAGGAAGGAGGAGAAGCATCACAAGCATATGGAGCATTTGGACAAAATGGGAACATT

Ace file of the UniGene biog3_v1.0_unigene26221 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16388	1/2
SustainPine v2.0	sp_v2.0_unigene24196	1/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Water deficit inducible protein LP3-3 (Fragment) n=4 Tax=Pinus taeda RepID=Q41095_PINTA	-	-	1.0e-19	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Blast2go	water-stress inducible protein 1	-	-	1.94415e-30	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	ABA/WDS induced protein	IPR003496	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NTF6

Fln msg: Distance to subject end: 69 aas, your sequence is shorter than subject: 76 - 146

Fln protein: MSEEKHHHHLFHHKKDDENQNAPSGVVYAETTTTYGDDQVIESTDVYGAGKVEDYEKARKEEKHHKHMEHLDKMGT

Protein Length: 77

Fln nts: CTGTCTAGAAAAGTCTTTGCATTTCCTTAGTTTCTTCGAATTTCTTCAGTTTGCAGAAG_-_ATGTCTGAGGAAAAACATCACCATCACCTGTTCCATCACAAGAAGGATGACGAAAACCAAAACGCCCCCTCGGGGGTCGTTTATGCTGAGACCACCACAACATATGGTGATGACCAAGTGATTGAGAGCACAGATGTGTATGGTGCTGGCAAAGTTGAGGACTACGAGAAGGCGAGGAAGGAGGAGAAGCATCACAAGCATATGGAGCATTTGGACAAAATGGGAACATT

Fln Alignment:

biogeco3_mira_rep_c30151___MSEEXXXXXXXXXXKDDENQNAPSGVVYAETTTTYGDDQVIESTDVYGAGKVE
A9NTF6__________________MSEEKPRHHLFHHKKEDENENAPSAVVYSETTTAYGGEEVIQSTDVYGAGNVK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain