SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene26208

Length: 404 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene26208
TCACTCAGTACGAGGGCCCGTCCACTTATGATGAGAACATACTGTGGAGTGAGAGTGATGACATGGGTTATGGGTATCGAACAATAAGGATGGCCAACAACATTGGGCTCAACCTGGACGCATTCCACGGCGACAGGAAGAGCGGAGGCATCAGAGATGGCACTCGCGCTGTGCTGTGGAAATGGAACAAGCAGGACAACCAGCTCTGGAAGCTCTCCCCTTGCTACTAATTACTGTATATCATATATCTAGTATTATACTATGGTACTATTACATGGCTAGGAGCAGTAGGAGATGATGCCATTCCTAGCATAACATAGCAGCTACTAAAGGATAGGATGGCTGATTACTATTTTCTTACACTAGATGTCTGTGTGTATGCAGCTTTTCTATCATCTCATAAA

Ace file of the UniGene biog3_v1.0_unigene26208 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27808	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	hydroxyproline-rich glycoprotein-like protein [Arabidopsis thaliana] gb\|AAL06490.1\|AF411801_1 At2g39050/T7F6.22 [Arabidopsis thaliana] gb\|AAM10411.1\| At2g39050/T7F6.22 [Arabidopsis thaliana] gb\|AAC79615.2\| expressed protein [Arabidopsis thaliana] gb\|AAM65	-	-	4.2039e-45	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Blast2go	stress responsive protein	-	-	0.0	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ricin B lectin domain	IPR000772	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRL9

Fln msg: your sequence is shorter than subject: 76 - 231

Fln protein: TQYEGPSTYDENILWSESDDMGYGYRTIRMANNIGLNLDAFHGDRKSGGIRDGTRAVLWKWNKQDNQLWKLSPCY*

Protein Length: 77

Fln nts: TCACTCAGTACGAGGGCCCGTCCACTTATGATGAGAACATACTGTGGAGTGAGAGTGATGACATGGGTTATGGGTATCGAACAATAAGGATGGCCAACAACATTGGGCTCAACCTGGACGCATTCCACGGCGACAGGAAGAGCGGAGGCATCAGAGATGGCACTCGCGCTGTGCTGTGGAAATGGAACAAGCAGGACAACCAGCTCTGGAAGCTCTCCCCTTGCTACTAA___TTACTGTATATCATATATCTAGTATTATACTATGGTACTATTACATGGCTAGGAGCAGTAGGAGATGATGCCATTCCTAGCATAACATAGCAGCTACTAAAGGATAGGATGGCTGATTACTATTTTCTTACACTAGATGTCTGTGTGTATGCAGCTTTTCTATCATCTCATAAA

Fln Alignment:

biogeco3_mira_rep_c30131___TQYEGPSTYDENILWSESDDMGYGYRTIRMANNIGLNLDAFHGDRKSGGIRDGTRAVLWKWNKQDNQLWKLSPC
B8LRL9__________________TQYEGPSTYDENILWSESEDMGYGYRTVRMANNIGLNLDAFQGDRRNGGIRDGTRAVLWKWNKQDNQLWKLSPC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain