SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene26186

Length: 247 nt

UniGene Fasta

>biog3_v1.0_unigene26186
AATGTTAATGTATCAAAGGGTACCCTGCCACAGATCAGGCGGAATTCGGTTCACCGTGAACGGGCACTCGTACTTCAATCTGGTCCTCATCACTAACGTTGGCGGAGCAGGGGACGTCCACGCGGTTTCCATAAAGGGCTCCCGGACAGGCTGGCAACCAATGTCCCGCAACTGGGGCCAGAATTGGCAGAGCAACAGTTACCTCAACGGGCAGACCCTCTCCTTCAAGGTCACCACCAGCGATGGG

Ace file of the UniGene biog3_v1.0_unigene26186

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7985	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Alpha-expansin n=1 Tax=Gossypium hirsutum RepID=Q8LKJ8_GOSHI	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	expansin	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	plant-type cell wall organization	GO:0009664	Biological Process	89%
Blast2go	extracellular region	GO:0005576	Cellular Component	89%
Blast2go	membrane	GO:0016020	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	Expansin/pollen allergen, DPBB domain	IPR007112	-	-
Sma3	Expansin/Lol pI	IPR007118	-	-
Sma3	Pollen allergen/expansin, C-terminal	IPR007117	-	-
Sma3	Expansin	IPR002963	-	-
Sma3		IPR014734	-	-
Sma3		IPR005132	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NXU9

Fln msg: Distance to subject end: 25 aas, your sequence is shorter than subject: 82 - 247

Fln protein: MLMYQRVPCHRSGGIRFTVNGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNSYLNGQTLSFKVTTSDG

Protein Length: 83

Fln nts: AATGTTAATGTATCAAAGGGTACCCTGCCACAGATCAGGCGGAATTCGGTTCACCGTGAACGGGCACTCGTACTTCAATCTGGTCCTCATCACTAACGTTGGCGGAGCAGGGGACGTCCACGCGGTTTCCATAAAGGGCTCCCGGACAGGCTGGCAACCAATGTCCCGCAACTGGGGCCAGAATTGGCAGAGCAACAGTTACCTCAACGGGCAGACCCTCTCCTTCAAGGTCACCACCAGCGATGGG

Fln Alignment:

biogeco3_mira_rep_c30084___LMYQRVPCHRSGGIRFTVNGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNSYLNGQTLSFKVTTSDG
A9NXU9__________________VMYQRVPCHRSGGIRFTVNGHSYFNLVLITNVGGAGDIHAVSIKGSRTGWQAMSRNWGQNWQSNSYLNGQGLSFKVTTSDG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain