SustainPineDB

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Assembly info
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ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene26179

Length: 377 nt

UniGene Fasta

>biog3_v1.0_unigene26179
AATGTCACAAATTTATTGTGCTCTATCAGTGGATGTGAGTCAAAGTCTTTATTGAATGAGATATCAAGGGCTGCTTTAACACCAGAGTGTAGCTACATTGCAAGTCCAGCTGCATCTTGGCTGGATGACTTTCTTGTATGGTTATCACCAGAAGCATTTGGGTGCTGCCGTAAATTTCCCAATGGGACCTACTGTCCTCCTGATGATTAGCCGCCTTGTTGTACATCTCGAGATGGCACCTGTGGTATAAGTGAGACTTGCCAGGACTGCACAACGTGCTTCTTACATTCAGATCTCATTGGAAGCCGCCCATCTACAGTACAATTCAGAGATAAACTTCCATGGTTTCTGTCTGCATTTCCATCTGCAGATTGTGC

Ace file of the UniGene biog3_v1.0_unigene26179

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14957	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	Cholesterol transport protein n=1 Tax=Populus trichocarpa RepID=B9HPX9_POPTR	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	78%
Blast2go	niemann-pick c1 protein	-	-	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	84%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	0.0	84%

Source	InterPros	Term	Type	Identity
Sma3	Sterol-sensing domain	IPR000731	-	-
Sma3	Chaperonin TCP-1, conserved site	IPR002194	-	-
Sma3	Patched	IPR003392	-	-
Sma3	Niemann-Pick C type protein	IPR004765	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9SMD3

Fln msg: Distance to subject end: 254 aas, your sequence is shorter than subject: 125 - 584

Fln protein: NVTNLLCSISGCESKSLLNEISRAALTPECSYIASPAASWLDDFLVWLSPEAFGCCRKFPNGTYCPPDD*PPCCTSRDGTCGISETCQDCTTCFLHSDLIGSRPSTVQFRDKLPWFLSAFPSADC

Protein Length: 126

Fln nts: AATGTCACAAATTTATTGTGCTCTATCAGTGGATGTGAGTCAAAGTCTTTATTGAATGAGATATCAAGGGCTGCTTTAACACCAGAGTGTAGCTACATTGCAAGTCCAGCTGCATCTTGGCTGGATGACTTTCTTGTATGGTTATCACCAGAAGCATTTGGGTGCTGCCGTAAATTTCCCAATGGGACCTACTGTCCTCCTGATGATTAGCCGCCTTGTTGTACATCTCGAGATGGCACCTGTGGTATAAGTGAGACTTGCCAGGACTGCACAACGTGCTTCTTACATTCAGATCTCATTGGAAGCCGCCCATCTACAGTACAATTCAGAGATAAACTTCCATGGTTTCTGTCTGCATTTCCATCTGCAGATTGTGC

Fln Alignment:

biogeco3_mira_rep_c30068___TNLLCSISGCESKSLLNEISRAALTPECSYIASPAASWLDDFLVWLSPEAFGCCRKFPNGTYXXXXXXXXXXTSRDGTCGISETCQDCTTCFLHSDLIGSRPSTVQFRDKLPWFLSAFPSADC
B9SMD3__________________TNQLCSISQCDSNSLLNEISRAASVPESSYIAKPAASWLDDFLVWISPEAFGCCRKFLNGTYCPPDDQPPCCSPDEGTCGVGGVCKDCTTCFRHSDLVNDRPSTVQFREKLPWFLNALPSADC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain