SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene26173

Length: 209 nt

UniGene Fasta

>biog3_v1.0_unigene26173
AATGTTGCTTCAGTGTCATCCACACCCGGATGACTTTTCAGATCCGCAAAGGCCATATCATTGTTGTTTCTTTATGGGCTTGCAGCGTAAACAAGGTATGCCCATCCAAGAAGGAGAACAGTTTGACATAAGGGTAACTGTGGATGAATTCAGGCATTCTGTCAAAATGTACACACTGTGGAAACCGGCATGGAGATTAATGTTTCTAC

Ace file of the UniGene biog3_v1.0_unigene26173

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5294	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	poly(A) polymerase 1 [Arabidopsis thaliana] gb\|AAF97277.1\|AC034106_20 Strong similarity to nuclear poly(A) polymerase from Arabidopsis thaliana gb\|AF255297 and contains a Nucleotidyltransferase PF\|01909 domain. ESTs gb\|AV536592, gb\|AV553256, gb\|AV561630,	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	poly polymerase	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Polynucleotide adenylyltransferase.	EC:2.7.7.19	-	0.0	87%

Source	GOs	Term	Type	Identity
Blast2go	RNA polyadenylation	GO:0043631	Biological Process	87%
Blast2go	sugar binding	GO:0005529	Molecular Function	87%
Blast2go	RNA binding	GO:0003723	Molecular Function	87%
Blast2go	protein binding	GO:0005515	Molecular Function	87%
Blast2go	polynucleotide adenylyltransferase activity	GO:0004652	Molecular Function	87%
Blast2go	nucleus	GO:0005634	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	Nucleotidyl transferase domain	IPR002934	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Protein of unknown function DUF599	IPR006747	-	-
Sma3	Poly(A) polymerase, RNA-binding domain	IPR007010	-	-
Sma3	Poly(A) polymerase, central domain	IPR007012	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Poly(A) polymerase	IPR014492	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRY2

Fln msg: Distance to subject end: 236 aas, your sequence is shorter than subject: 69 - 712

Fln protein: MLLQCHPHPDDFSDPQRPYHCCFFMGLQRKQGMPIQEGEQFDIRVTVDEFRHSVKMYTLWKPAWRLMFL

Protein Length: 70

Fln nts: AATGTTGCTTCAGTGTCATCCACACCCGGATGACTTTTCAGATCCGCAAAGGCCATATCATTGTTGTTTCTTTATGGGCTTGCAGCGTAAACAAGGTATGCCCATCCAAGAAGGAGAACAGTTTGACATAAGGGTAACTGTGGATGAATTCAGGCATTCTGTCAAAATGTACACACTGTGGAAACCGGCATGGAGATTAATGTTTCTAC

Fln Alignment:

biogeco3_mira_rep_c30057___LLQCHPHPDDFSDPQRPYHCCFFMGLQRKQGMPIQEGEQFDIRVTVDEFRHSVKMYTLWK
B8LRY2__________________MLQCHPHPDDFSDPQRPYHCCFFMGLQRKQGMPIQEGEQFDIRVTVDEFRHSVKMYTLWK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain